RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 DUSP13Q9UII6 198 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 SIGLEC7Q9Y286 467 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 ADAM18Q9Y3Q7 739 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 LOC100289279A0A1B0GTE1 492 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 GMNCA6NCL1 334 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 ERCC1P07992 297 aaPredicted RBP12.71□□□□□ -0.37
CLN3-213ENST00000565047 CD14P08571 375 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 CST2P09228 141 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 NAT2P11245 290 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 STOMP27105 288 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 LAP3P28838 519 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 RAD52P43351 418 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 ERVK-25P63136 954 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 CD47Q08722 323 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 SEC23BQ15437 767 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 SGCAQ16586 387 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 TBC1D28Q2M2D7 210 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 MESTQ5EB52 335 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 PIGWQ7Z7B1 504 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 OR1J2Q8NGS2 313 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 HPS1Q92902 700 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 FAM162AQ96A26 154 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 RBP7Q96R05 134 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 GPX7Q96SL4 187 aaPredicted RBP12.71□□□□□ -0.37
CLN3-213ENST00000565047 BCL2L14Q9BZR8 327 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 CDH20Q9HBT6 801 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 NRIP3Q9NQ35 241 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 TAAR3PQ9P1P4 343 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 RPS6KA6Q9UK32 745 aa12.71□□□□□ -0.37
CLN3-213ENST00000565047 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.71□□□□□ -0.387e-9■■□□□ 13.5
CLN3-213ENST00000565047 TRBV4-1A0A0J9YWV2 114 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 IQCMA0A1B0GVH7 501 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 A6NIZ1 184 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 C17orf100A8MU93 164 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 AHCYL1O43865 530 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 IGHV3-13P01766 116 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 H1F0P07305 194 aaKnown RBP12.7□□□□□ -0.38
CLN3-213ENST00000565047 NR2C1P13056 603 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 RHCEP18577 417 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 THBS2P35442 1172 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 MAGEB1P43366 347 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 GYS2P54840 703 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 RAP1BP61224 184 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 RAP1AP62834 184 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 PLP2Q04941 152 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 FAM166AQ6J272 317 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 UGT2A3Q6UWM9 527 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 THSD4Q6ZMP0 1018 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 SYT9Q86SS6 491 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 RNF148Q8N7C7 305 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 AKR7LQ8NHP1 331 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 SYNPRQ8TBG9 265 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 RDH5Q92781 318 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 MARS2Q96GW9 593 aaKnown RBP12.7□□□□□ -0.38
CLN3-213ENST00000565047 FAM46AQ96IP4 442 aaKnown RBP12.7□□□□□ -0.38
CLN3-213ENST00000565047 Q96M85 177 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 OR2H1Q9GZK4 316 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 CHODLQ9H9P2 273 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 POLE4Q9NR33 117 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 NKIRAS2Q9NYR9 191 aa12.7□□□□□ -0.38
CLN3-213ENST00000565047 H7C1C5 153 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 IMPA2O14732 288 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 WNT9BO14905 357 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 DIRAS1O95057 198 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 HSD17B1P14061 328 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 ACHEP22303 614 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 APLNRP35414 380 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 MMP15P51511 669 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 CHN2P52757 468 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 KLF3P57682 345 aaPredicted RBP12.69□□□□□ -0.38
CLN3-213ENST00000565047 LCN6P62502 163 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 HSF2Q03933 536 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 FAM120AOSQ5T036 256 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 SPATA3Q8NHX4 192 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 C11orf40Q8WZ69 217 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 GTF3AQ92664 365 aaKnown RBP12.69□□□□□ -0.38
CLN3-213ENST00000565047 FAM107BQ9H098 131 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 LRMDAQ9H2I8 198 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 OR51B6Q9H340 312 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 CCNB1IP1Q9NPC3 277 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 HINT3Q9NQE9 182 aaKnown RBP12.69□□□□□ -0.38
CLN3-213ENST00000565047 ARL8BQ9NVJ2 186 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 LPAR3Q9UBY5 353 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 KLHL21Q9UJP4 597 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 SAMD4AQ9UPU9 718 aaKnown RBP12.69□□□□□ -0.38
CLN3-213ENST00000565047 TMEM5Q9Y2B1 443 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 TIMM10BQ9Y5J6 103 aa12.69□□□□□ -0.38
CLN3-213ENST00000565047 PRSS37A4D1T9 235 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 C5orf49A4QMS7 147 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 TXNDC12O95881 172 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 TGFAP01135 160 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 NGFP01138 241 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 LCKP06239 509 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 CTLA4P16410 223 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 MSR1P21757 451 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 MPV17P39210 176 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 CDH15P55291 814 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 TMEM33P57088 247 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 ALKBH6Q3KRA9 238 aa12.68□□□□□ -0.38
CLN3-213ENST00000565047 MBNL2Q5VZF2 373 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms