RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 MEP1BQ16820 701 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 DNM1P34Q6PK57 102 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 GLB1L2Q8IW92 636 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 GALNT4Q8N4A0 578 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 BBS1Q8NFJ9 593 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 NRG4Q8WWG1 115 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 C11orf40Q8WZ69 217 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 PTP4A1Q93096 173 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 FBXO17Q96EF6 278 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 GRIP2Q9C0E4 1043 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 CRNNQ9UBG3 495 aaPredicted RBP18.98■□□□□ 0.63
SNX1-210ENST00000560260 ORC6Q9Y5N6 252 aa18.98■□□□□ 0.63
SNX1-210ENST00000560260 IGHV1-18A0A0C4DH31 117 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 A0A1W2PPR1 153 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 FARS2O95363 451 aaKnown RBP18.97■□□□□ 0.63
SNX1-210ENST00000560260 WNT11O96014 354 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 MMP7P09237 267 aaPredicted RBP18.97■□□□□ 0.63
SNX1-210ENST00000560260 CD79AP11912 226 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 NPR2P20594 1047 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 EFNB1P98172 346 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 SNAPC1Q16533 368 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 FAM27BQ5VT28 67 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 PLBD1Q6P4A8 553 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 SLC16A14Q7RTX9 510 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 PROKR2Q8NFJ6 384 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 SLC26A10Q8NG04 563 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 OR2T4Q8NH00 348 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 PIK3IP1Q96FE7 263 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 PLPPR2Q96GM1 343 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 ZNF416Q9BWM5 594 aa18.97■□□□□ 0.63
SNX1-210ENST00000560260 MRPL22Q9NWU5 206 aaKnown RBP18.97■□□□□ 0.63
SNX1-210ENST00000560260 M0R1B8 84 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 IGKV3-15P01624 115 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 IGLV1-44P01699 117 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 TFP02787 698 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 PSKH1P11801 424 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 CENPAP49450 140 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 SPOCK1Q08629 439 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 KCNMB1Q16558 191 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 GSG1Q2KHT4 349 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 BEX5Q5H9J7 111 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 NCMAPQ5T1S8 102 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 LINC01590Q5TEZ4 76 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 CPOQ8IVL8 374 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 CCDC36Q8IYA8 594 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 C14orf79Q96F83 325 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 SLC38A2Q96QD8 506 aa18.96■□□□□ 0.63
SNX1-210ENST00000560260 PRR23D1E9PI22 279 aaPredicted RBP18.95■□□□□ 0.62
SNX1-210ENST00000560260 UBL3O95164 117 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 ATP6V1G2O95670 118 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 CST2P09228 141 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 PRR23D2P0DMB1 279 aaPredicted RBP18.95■□□□□ 0.62
SNX1-210ENST00000560260 CBR1P16152 277 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 ZNF32P17041 273 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 IDH3GP51553 393 aaPredicted RBP18.95■□□□□ 0.62
SNX1-210ENST00000560260 TLE4Q04727 773 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 BSPH1Q075Z2 132 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 C1QTNF12Q5T7M4 302 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 CXXC5Q7LFL8 322 aaKnown RBP18.95■□□□□ 0.62
SNX1-210ENST00000560260 SSX8Q7RTT4 187 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 BCDIN3DQ7Z5W3 292 aaKnown RBP18.95■□□□□ 0.62
SNX1-210ENST00000560260 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.95■□□□□ 0.62
SNX1-210ENST00000560260 PACRGLQ8N7B6 248 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 TCEANCQ8N8B7 351 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 NANOS1Q8WY41 292 aaKnown RBP18.95■□□□□ 0.62
SNX1-210ENST00000560260 OTULINQ96BN8 352 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 MS4A3Q96HJ5 214 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 PLEKHA8Q96JA3 519 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 PITX2Q99697 317 aa18.95■□□□□ 0.62
SNX1-210ENST00000560260 UNC79Q9P2D8 2635 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 TVP23AA6NH52 213 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 CTAG2O75638 210 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 CECR9P0C854 216 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 SLC2A5P22732 501 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 GGT2P36268 569 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 PTDSS1P48651 473 aaKnown RBP18.94■□□□□ 0.62
SNX1-210ENST00000560260 RAB1AP62820 205 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 HSF2Q03933 536 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 GLO1Q04760 184 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 RIPK1Q13546 671 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 ZNF584Q8IVC4 421 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 FAM169BQ8N8A8 192 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 HRASLS5Q96KN8 279 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 TEX12Q9BXU0 123 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 OR51V1Q9H2C8 321 aa18.94■□□□□ 0.62
SNX1-210ENST00000560260 SMPD3Q9NY59 655 aaPredicted RBP18.94■□□□□ 0.62
SNX1-210ENST00000560260 PLAUP00749 431 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 ZNF14P17017 642 aaPredicted RBP18.93■□□□□ 0.62
SNX1-210ENST00000560260 PAICSP22234 425 aaKnown RBP18.93■□□□□ 0.62
SNX1-210ENST00000560260 CD40P25942 277 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 TEKQ02763 1124 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 RAB39AQ14964 217 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 SLC36A2Q495M3 483 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 ZNF511Q8NB15 262 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 FAM81AQ8TBF8 368 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 TMEM163Q8TC26 289 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 UBE2FQ969M7 185 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 IL4I1Q96RQ9 567 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 TMEM204Q9BSN7 226 aa18.93■□□□□ 0.62
SNX1-210ENST00000560260 PRRG3Q9BZD7 231 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms