RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ADARB1P78563 741 aaKnown RBP14.97□□□□□ -0.01
LIG1-204ENST00000542460 HSF2Q03933 536 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 PPA1Q15181 289 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 KCNMB1Q16558 191 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 KLHL12Q53G59 568 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SLC16A14Q7RTX9 510 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 DPPA2Q7Z7J5 298 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 OR51L1Q8NGJ5 315 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 ZNRF4Q8WWF5 429 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 NANOS1Q8WY41 292 aaKnown RBP14.97□□□□□ -0.01
LIG1-204ENST00000542460 DACH2Q96NX9 599 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 APOL4Q9BPW4 351 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SPOCK3Q9BQ16 436 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 KCNN2Q9H2S1 579 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 H2AFY2Q9P0M6 372 aaPredicted RBP14.97□□□□□ -0.01
LIG1-204ENST00000542460 SLC25A15Q9Y619 301 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 A0A1W2PR80 420 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 MPZL2O60487 215 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 GLCEO94923 617 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 GPANK1O95872 356 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 HRGP04196 525 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SCG5P05408 212 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 THBDP07204 575 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 GAAP10253 952 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 FMO3P31513 532 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 CAPGP40121 348 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SNRPGP62308 76 aaKnown RBP14.97□□□□□ -0.01
LIG1-204ENST00000542460 LSM6P62312 80 aaKnown RBP14.97□□□□□ -0.01
LIG1-204ENST00000542460 IL18R1Q13478 541 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SNCBQ16143 134 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SLC36A2Q495M3 483 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SLC35D3Q5M8T2 416 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 AADACL4Q5VUY2 407 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 NXNL2Q5VZ03 156 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SP5Q6BEB4 398 aaPredicted RBP14.97□□□□□ -0.01
LIG1-204ENST00000542460 IZUMO2Q6UXV1 221 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 MEX3BQ6ZN04 569 aaKnown RBP14.97□□□□□ -0.01
LIG1-204ENST00000542460 LRRC18Q8N456 261 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 BBS1Q8NFJ9 593 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 SLC26A10Q8NG04 563 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 UBE2FQ969M7 185 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 ZC3HAV1LQ96H79 300 aaKnown RBP14.97□□□□□ -0.01
LIG1-204ENST00000542460 ZNF226Q9NYT6 803 aa14.97□□□□□ -0.01
LIG1-204ENST00000542460 MAST4O15021 2626 aa14.96□□□□□ -0.01
LIG1-204ENST00000542460 CACNA1CQ13936 2221 aa14.96□□□□□ -0.01
LIG1-204ENST00000542460 ADGRG4Q8IZF6 3080 aa14.96□□□□□ -0.01
LIG1-204ENST00000542460 SPTAN1Q13813 2472 aaKnown RBP14.96□□□□□ -0.01
LIG1-204ENST00000542460 UBL3O95164 117 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 MPZL1O95297 269 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 HLA-HP01893 362 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 TFP02787 698 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 CST2P09228 141 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 CD79AP11912 226 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 SLC2A5P22732 501 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 RPS7P62081 194 aaKnown RBP14.96□□□□□ -0.02
LIG1-204ENST00000542460 TEKQ02763 1124 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 APOFQ13790 326 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 SLC25A30Q5SVS4 291 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 LINC01590Q5TEZ4 76 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 BCDIN3DQ7Z5W3 292 aaKnown RBP14.96□□□□□ -0.02
LIG1-204ENST00000542460 OR6K6Q8NGW6 343 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 RHOXF1Q8NHV9 184 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 C11orf40Q8WZ69 217 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 TFAP2CQ92754 450 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 TEAD3Q99594 435 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 WACQ9BTA9 647 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 ZNF416Q9BWM5 594 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 MOV10Q9HCE1 1003 aaKnown RBP14.96□□□□□ -0.02
LIG1-204ENST00000542460 EMC7Q9NPA0 242 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 B3GNT2Q9NY97 397 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 ZNF224Q9NZL3 707 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 CRIM1Q9NZV1 1036 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 HCFC1P51610 2035 aa14.96□□□□□ -0.02
LIG1-204ENST00000542460 C12orf71A8MTZ7 269 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 CASKO14936 926 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 EPXP11678 715 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 HSPA13P48723 471 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 PCBD1P61457 104 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 RAB1AP62820 205 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 TUBA1BP68363 451 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 TUBA4AP68366 448 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 GSG1Q2KHT4 349 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 ZNF691Q5VV52 312 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 MEDAGQ5VYS4 303 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 ALKBH2Q6NS38 261 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 UGT2A3Q6UWM9 527 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 TUBA1AQ71U36 451 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 MEPCEQ7L2J0 689 aaKnown RBP14.95□□□□□ -0.02
LIG1-204ENST00000542460 SYT9Q86SS6 491 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 GID4Q8IVV7 300 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 ENTHD1Q8IYW4 607 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 ZNF511Q8NB15 262 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 SETD9Q8NE22 299 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 OR10H5Q8NGA6 315 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 FAM222BQ8WU58 562 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 NGBQ9NPG2 151 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 RASSF1Q9NS23 344 aa14.95□□□□□ -0.02
LIG1-204ENST00000542460 MRPL22Q9NWU5 206 aaKnown RBP14.95□□□□□ -0.02
LIG1-204ENST00000542460 ICE1Q9Y2F5 2266 aa14.94□□□□□ -0.02
LIG1-204ENST00000542460 ZNF503-AS2A6NEH8 195 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms