RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CDKN1AP38936 164 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 EFNB3Q15768 340 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 SGCAQ16586 387 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 MSMPQ1L6U9 139 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 SLC36A2Q495M3 483 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 Q5PR19 223 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 DNM1P46Q6ZS02 220 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 LRRC18Q8N456 261 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 AQP11Q8NBQ7 271 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 UTP4Q969X6 686 aaKnown RBP11.21□□□□□ -0.61
VPS28-216ENST00000533806 GTPBP3Q969Y2 492 aaKnown RBP11.21□□□□□ -0.61
VPS28-216ENST00000533806 DUS3LQ96G46 650 aaKnown RBP11.21□□□□□ -0.61
VPS28-216ENST00000533806 FEVQ99581 238 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 KCNS3Q9BQ31 491 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 NUAK2Q9H093 628 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 WNT5BQ9H1J7 359 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 SYT4Q9H2B2 425 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 POLE4Q9NR33 117 aa11.21□□□□□ -0.61
VPS28-216ENST00000533806 IGLV1-36A0A0B4J1U3 117 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 TMEM129A0AVI4 362 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 SLC16A7O60669 478 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 SNAP29O95721 258 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 IGHV4-39P01824 125 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 IGFBP1P08833 259 aaPredicted RBP11.2□□□□□ -0.62
VPS28-216ENST00000533806 OR4A8P0C604 315 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 ZNF32P17041 273 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 GSTM3P21266 225 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 MSR1P21757 451 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 SERPINF1P36955 418 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 PSG4Q00888 419 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 COX10Q12887 443 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 KCNMB1Q16558 191 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 PABPC1L2AQ5JQF8 200 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 RPL13AP3Q6NVV1 102 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 TMEM53Q6P2H8 277 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 UGT2A3Q6UWM9 527 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 YTHDF3Q7Z739 585 aaKnown RBP11.2□□□□□ -0.62
VPS28-216ENST00000533806 SYT9Q86SS6 491 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 ZBTB46Q86UZ6 589 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 OR6V1Q8N148 313 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 PAQR4Q8N4S7 273 aaPredicted RBP11.2□□□□□ -0.62
VPS28-216ENST00000533806 NPEPL1Q8NDH3 523 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 OR10G2Q8NGC3 310 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 TRMT61AQ96FX7 289 aaKnown RBP11.2□□□□□ -0.62
VPS28-216ENST00000533806 TSSK2Q96PF2 358 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 NIPSNAP1Q9BPW8 284 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 WACQ9BTA9 647 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 IFT27Q9BW83 186 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 ZNF416Q9BWM5 594 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 CACNG6Q9BXT2 260 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 C1orf198Q9H425 327 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 PLK3Q9H4B4 646 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 DNAJB9Q9UBS3 223 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 REV1Q9UBZ9 1251 aa11.2□□□□□ -0.62
VPS28-216ENST00000533806 NF1P21359 2839 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 LOC100509620A0A075B734 347 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 OR6C68A6NDL8 312 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 B9A039 149 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 ICMTO60725 284 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 KHDRBS3O75525 346 aaKnown RBP11.19□□□□□ -0.62
VPS28-216ENST00000533806 GLRXP35754 106 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 ERFP50548 548 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 ATP5J2P56134 94 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 LSM6P62312 80 aaKnown RBP11.19□□□□□ -0.62
VPS28-216ENST00000533806 CBX1P83916 185 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 DBPQ10586 325 aaPredicted RBP11.19□□□□□ -0.62
VPS28-216ENST00000533806 CCNIQ14094 377 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 DAG1Q14118 895 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 KRT80Q6KB66 452 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 GLB1L2Q8IW92 636 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 LNX2Q8N448 690 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 SLC30A7Q8NEW0 376 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 OR4K13Q8NH42 304 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 GIPC3Q8TF64 312 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 POM121L2Q96KW2 1035 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 NMNAT3Q96T66 252 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 DOK1Q99704 481 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 OR2H1Q9GZK4 316 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 YY1AP1Q9H869 796 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 RNF121Q9H920 327 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 ARMC1Q9NVT9 282 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 GDF2Q9UK05 429 aaPredicted RBP11.19□□□□□ -0.62
VPS28-216ENST00000533806 B9D1Q9UPM9 204 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 COA3Q9Y2R0 106 aaPredicted RBP11.19□□□□□ -0.62
VPS28-216ENST00000533806 TIMM10BQ9Y5J6 103 aa11.19□□□□□ -0.62
VPS28-216ENST00000533806 HEATR1Q9H583 2144 aaKnown RBP11.18□□□□□ -0.62
VPS28-216ENST00000533806 A0A1W2PPL8 197 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 C12orf71A8MTZ7 269 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 GPRIN2O60269 458 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 MPZL1O95297 269 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 PTHP01270 115 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 GAAP10253 952 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 CCL2P13500 99 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 CD99P14209 185 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 FOSL1P15407 271 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 APEX1P27695 318 aaKnown RBP11.18□□□□□ -0.62
VPS28-216ENST00000533806 PCSK6P29122 969 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 CRABP1P29762 137 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 EVX1P49640 407 aa11.18□□□□□ -0.62
VPS28-216ENST00000533806 PCBD1P61457 104 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms