RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ZNF583Q96ND8 569 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 ALG12Q9BV10 488 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 FNDC11Q9BVV2 318 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 EGLN1Q9GZT9 426 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 ZNF665Q9H7R5 613 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 A0A0A6YYJ9 748 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 ELOVL7A1L3X0 281 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 A6NIZ1 184 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 FAM220BPB1ANY3 271 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 FXYD1O00168 92 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 SPRY3O43610 288 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 MPZL1O95297 269 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 IGHV3-13P01766 116 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 ARHGDIAP52565 204 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 ZNF133P52736 654 aaPredicted RBP12.57□□□□□ -0.4
VPS28-215ENST00000531924 RAP1BP61224 184 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 RPL27P61353 136 aaKnown RBP12.57□□□□□ -0.4
VPS28-215ENST00000531924 LMO4P61968 165 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 RAP1AP62834 184 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 ERVK-25P63136 954 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 FMODQ06828 376 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 FAM205BPQ63HN1 556 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 ARL9Q6T311 187 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 C12orf54Q6X4T0 127 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 PEG10Q86TG7 708 aaKnown RBP12.57□□□□□ -0.4
VPS28-215ENST00000531924 C1orf174Q8IYL3 243 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 ABHD4Q8TB40 342 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 HDAC2Q92769 488 aaKnown RBP12.57□□□□□ -0.4
VPS28-215ENST00000531924 PRRC1Q96M27 445 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 SAR1AQ9NR31 198 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 CYSLTR2Q9NS75 346 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 HIF3AQ9Y2N7 669 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 AP3M1Q9Y2T2 418 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 UGT2A1Q9Y4X1 527 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 TIMM10BQ9Y5J6 103 aa12.57□□□□□ -0.4
VPS28-215ENST00000531924 SVEP1Q4LDE5 3571 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 A0A0G2JMP0 313 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 A0A0X1KG70 313 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 A0A1W2PPL8 197 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 C12orf71A8MTZ7 269 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 EFCAB9A8MZ26 197 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 GSTA4O15217 222 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 PIP5K1CO60331 668 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 PNPP00491 289 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 IFNW1P05000 195 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 LAP3P28838 519 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 LIPAP38571 399 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 CTXN1P60606 82 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 SELENOWP63302 87 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 PSG4Q00888 419 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 SLC3A1Q07837 685 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 ZMAT1Q5H9K5 638 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 FAM209AQ5JX71 171 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 FAM27BQ5VT28 67 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 SLC25A47Q6Q0C1 308 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 OAFQ86UD1 273 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 IGFN1Q86VF2 1251 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 TREML1Q86YW5 311 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 MICU2Q8IYU8 434 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 OR4M2Q8NGB6 313 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 OR51A7Q8NH64 312 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 CCL17Q92583 94 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 POM121L2Q96KW2 1035 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 NDEL1Q9GZM8 345 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 ELOVL3Q9HB03 270 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 FGFR1OP2Q9NVK5 253 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 CAPN7Q9Y6W3 813 aa12.56□□□□□ -0.4
VPS28-215ENST00000531924 ISPDA4D126 451 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 RGS9O75916 674 aaPredicted RBP12.55□□□□□ -0.4
VPS28-215ENST00000531924 ZNF682O95780 498 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 CST2P09228 141 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 RPL4P36578 427 aaKnown RBP12.55□□□□□ -0.4
VPS28-215ENST00000531924 YAP1P46937 504 aaKnown RBP12.55□□□□□ -0.4
VPS28-215ENST00000531924 PPP1CBP62140 327 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 TRAM2Q15035 370 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 ZNF730Q6ZMV8 503 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 RRM2BQ7LG56 351 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 NRMQ8IXM6 262 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 SLC25A40Q8TBP6 338 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 KLF14Q8TD94 323 aaPredicted RBP12.55□□□□□ -0.4
VPS28-215ENST00000531924 IPCEF1Q8WWN9 437 aaPredicted RBP12.55□□□□□ -0.4
VPS28-215ENST00000531924 GTF3AQ92664 365 aaKnown RBP12.55□□□□□ -0.4
VPS28-215ENST00000531924 NABP1Q96AH0 204 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 GAL3ST1Q99999 423 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 OR2H1Q9GZK4 316 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 OR2J1Q9GZK6 312 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 RHCGQ9UBD6 479 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 WIPI2Q9Y4P8 454 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 NBEAL1Q6ZS30 2694 aa12.55□□□□□ -0.4
VPS28-215ENST00000531924 LOC100509620A0A075B734 347 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 IGKV1D-43A0A0B4J1Z2 117 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 XKRYO14609 159 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 PLPP2O43688 288 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 IGHV1-46P01743 117 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 TSPAN19P0C672 248 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 MSR1P21757 451 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 MPV17P39210 176 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 WNT5AP41221 380 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 ACTG1P63261 375 aa12.54□□□□□ -0.4
VPS28-215ENST00000531924 ANKDD1AQ495B1 522 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms