RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 RSRC1Q96IZ7 334 aaKnown RBP9.13□□□□□ -0.95
CD44-227ENST00000528086 CLPTM1LQ96KA5 538 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 TSSK2Q96PF2 358 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 OR2H1Q9GZK4 316 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 OR51B6Q9H340 312 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 TPK1Q9H3S4 243 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 POFUT1Q9H488 388 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 EMC7Q9NPA0 242 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 IL1RAPQ9NPH3 570 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 POLE4Q9NR33 117 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 TAS2R1Q9NYW7 299 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 MAGEL2Q9UJ55 1249 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 SAMD4AQ9UPU9 718 aaKnown RBP9.13□□□□□ -0.95
CD44-227ENST00000528086 CMAHPQ9Y471 501 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 ATRQ13535 2644 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 WNT9BO14905 357 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 LILRA1O75019 489 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 NGFP01138 241 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 TP53P04637 393 aaPredicted RBP9.12□□□□□ -0.95
CD44-227ENST00000528086 CST2P09228 141 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 COL8A2P25067 703 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 GIFP27352 417 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 MPV17P39210 176 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 MAGEA2P43356 314 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 ZNF84P51523 738 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 HMGA2P52926 109 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 UCP2P55851 309 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 PPP1R8Q12972 351 aaKnown RBP9.12□□□□□ -0.95
CD44-227ENST00000528086 RIN1Q13671 783 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 ALKBH6Q3KRA9 238 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 ZNF362Q5T0B9 420 aaPredicted RBP9.12□□□□□ -0.95
CD44-227ENST00000528086 ZNF774Q6NX45 483 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 PGBD2Q6P3X8 592 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 RFPL4BQ6ZWI9 263 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 ZNRF4Q8WWF5 429 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 NSMCE2Q96MF7 247 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 DDOQ99489 341 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 BTBD10Q9BSF8 475 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 BPESC1Q9GZL8 116 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 VSX1Q9NZR4 365 aaPredicted RBP9.12□□□□□ -0.95
CD44-227ENST00000528086 IER3IP1Q9Y5U9 82 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 LYVE1Q9Y5Y7 322 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 ARHGAP32A7KAX9 2087 aa9.12□□□□□ -0.95
CD44-227ENST00000528086 IGLV1-36A0A0B4J1U3 117 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 LRP5LA4QPB2 252 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 UNC119BA6NIH7 251 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 A6NIZ1 184 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 ACOT8O14734 319 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 SYNGR3O43761 229 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 ICMTO60725 284 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 CRLF1O75462 422 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 RP2O75695 350 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 NDUFB2O95178 105 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 PPP1R3DO95685 299 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 NAT2P11245 290 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 PSKH1P11801 424 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 DAOP14920 347 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 SLC25A16P16260 332 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 ANOS1P23352 680 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 STOMP27105 288 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 SDHAP31040 664 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 RRM2P31350 389 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 MAGEB1P43366 347 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 PDLIM4P50479 330 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 DSCR9P59020 149 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 RAP1BP61224 184 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 RAP1AP62834 184 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 SPIBQ01892 262 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 KRR1Q13601 381 aaKnown RBP9.11□□□□□ -0.95
CD44-227ENST00000528086 TRIP10Q15642 601 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 RSPO1Q2MKA7 263 aaPredicted RBP9.11□□□□□ -0.95
CD44-227ENST00000528086 SLC36A2Q495M3 483 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 C6orf52Q5T4I8 152 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 FAM205BPQ63HN1 556 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 LCN8Q6JVE9 175 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 C1orf94Q6P1W5 598 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 TMEM53Q6P2H8 277 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 HDDC2Q7Z4H3 204 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 CYP4Z1Q86W10 505 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 ZNF786Q8N393 782 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 OR9Q2Q8NGE9 314 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 OR8D4Q8NGM9 314 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 MARS2Q96GW9 593 aaKnown RBP9.11□□□□□ -0.95
CD44-227ENST00000528086 ZNF570Q96NI8 536 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 RBP7Q96R05 134 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 PLA2G12AQ9BZM1 189 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 NUAK2Q9H093 628 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 SYT4Q9H2B2 425 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 RNF121Q9H920 327 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 ACTR3BQ9P1U1 418 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 STX18Q9P2W9 335 aaKnown RBP9.11□□□□□ -0.95
CD44-227ENST00000528086 REV1Q9UBZ9 1251 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 SLC7A8Q9UHI5 535 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 TMEM5Q9Y2B1 443 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 COA3Q9Y2R0 106 aaPredicted RBP9.11□□□□□ -0.95
CD44-227ENST00000528086 TANC2Q9HCD6 1990 aa9.11□□□□□ -0.95
CD44-227ENST00000528086 A0A1W2PPL8 197 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 LOC390937A0A1W2PQ73 354 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 OR6C68A6NDL8 312 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 SOCS2O14508 198 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms