RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 H3BUI4 141 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 AIPO00170 330 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 MT-ATP6P00846 226 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 ETV6P41212 452 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 PPICP45877 212 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 IAH1Q2TAA2 248 aaPredicted RBP11.57□□□□□ -0.56
USP53-209ENST00000514665 C8orf82Q6P1X6 216 aaPredicted RBP11.57□□□□□ -0.56
USP53-209ENST00000514665 LIX1LQ8IVB5 337 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 MISPQ8IVT2 679 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 SECTM1Q8WVN6 248 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 C8orf44Q96CB5 159 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 CD300LBA8K4G0 201 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 KRBOX1C9JBD0 128 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 CTSVO60911 334 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 IGHV3-9P01782 118 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 MAP2K6P52564 334 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 NPSR1Q6W5P4 371 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 SLC43A2Q8N370 569 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 RBPMSQ93062 196 aaKnown RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 TCEAL2Q9H3H9 227 aaPredicted RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 FANCFQ9NPI8 374 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 GPATCH2Q9NW75 528 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 SLC17A4Q9Y2C5 497 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 A0A087WV62 115 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 A0A1W2PS29 197 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 EIF4E2O60573 245 aaKnown RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 ICOSLGO75144 302 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 ALOX12BO75342 701 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 LALBAP00709 142 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 C1QCP02747 245 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 EPXP11678 715 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 IL32P24001 234 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 ALDH3B1P43353 468 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 S100A12P80511 92 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 SFTPA1Q8IWL2 248 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 STT3BQ8TCJ2 826 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 APH1BQ8WW43 257 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 NKX3-1Q99801 234 aaPredicted RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 ATF6BQ99941 703 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 FBXO34Q9NWN3 711 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 RAB22AQ9UL26 194 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 PCDHGA5Q9Y5G8 931 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 COL4A5P29400 1685 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 TRBV5-3A0A0A0MS03 114 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 NRG2O14511 850 aaPredicted RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 PMS2P2O95744 297 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 ITGB2P05107 769 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 CRYBB2P43320 205 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 SLC35A1P78382 337 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 DBPQ10586 325 aaPredicted RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 ZNF169Q14929 603 aaPredicted RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 MLF2Q15773 248 aaPredicted RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 TMEM201Q5SNT2 666 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 C9orf50Q5SZB4 431 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 HSD17B11Q8NBQ5 300 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 CPT1CQ8TCG5 803 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 WWTR1Q9GZV5 400 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 SLCO5A1Q9H2Y9 848 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 ZNF286AQ9HBT8 521 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 HRASLSQ9HDD0 168 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 B3GNT2Q9NY97 397 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 FBXL4Q9UKA2 621 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 TRAPPC2LH3BP13 241 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 DSCR3O14972 297 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 LINC01565O15544 149 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 PLRG1O43660 514 aaKnown RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 IDH3GP51553 393 aaPredicted RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 P2RX1P51575 399 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 HMGA2P52926 109 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 SVBPQ8N300 66 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 CNEP1R1Q8N9A8 125 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 NUDCD2Q8WVJ2 157 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 NANOS1Q8WY41 292 aaKnown RBP11.56□□□□□ -0.56
USP53-209ENST00000514665 SIGLEC11Q96RL6 698 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 PFDN5Q99471 154 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 POFUT1Q9H488 388 aa11.56□□□□□ -0.56
USP53-209ENST00000514665 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.56□□□□□ -0.56
USP53-209ENST00000514665 LTBP4Q8N2S1 1624 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 PRAMEF25A6NGN4 478 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 NAGAP17050 411 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 PI3P19957 117 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 CPT2P23786 658 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 CLDN20P56880 219 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 OR14J1Q9UGF5 321 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 TIMM8BQ9Y5J9 83 aaPredicted RBP11.55□□□□□ -0.56
USP53-209ENST00000514665 SLC34A2O95436 690 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 IGHA2P01877 340 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 RAF1P04049 648 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 CD3DP04234 171 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 CALCBP10092 127 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 ZNF136P52737 540 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 HSF1Q00613 529 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 BDH1Q02338 343 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 ZNF680Q8NEM1 530 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 OR2G2Q8NGZ5 317 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 OR51E1Q8TCB6 317 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 SDSLQ96GA7 329 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 SNAPINO95295 136 aa11.55□□□□□ -0.56
USP53-209ENST00000514665 MYF5P13349 255 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms