RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CSNK1A1LQ8N752 337 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 C19orf47Q8N9M1 422 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 OR51A4Q8NGJ6 313 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 OR4A4PQ8NGN8 299 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 HCAR1Q9BXC0 346 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 PSORS1C1Q9UIG5 152 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC9B1P1A6NJY1 282 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 RNASET2O00584 256 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 SMIM18P0DKX4 95 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 PSMB6P28072 239 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 MALLQ13021 153 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 ILKQ13418 452 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 C1orf61Q13536 156 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 CST6Q15828 149 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 MPEG1Q2M385 716 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 FIBINQ8TAL6 211 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 LIPHQ8WWY8 451 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 SENP5Q96HI0 755 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 HHIPQ96QV1 700 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 OR52D1Q9H346 318 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 IL17CQ9P0M4 197 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 CLDN1O95832 211 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 DTYMKP23919 212 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 S100A7P31151 101 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 HOXC13P31276 330 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 IRS1P35568 1242 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 UBE2NP61088 152 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 RPS25P62851 125 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC22A6Q4U2R8 563 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 PM20D1Q6GTS8 502 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 PRR18Q8N4B5 295 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 OR9A2Q8NGT5 310 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 NEIL2Q969S2 332 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 GMLQ99445 158 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 NAA11Q9BSU3 229 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 GPR62Q9BZJ7 368 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 TINAGL1Q9GZM7 467 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 RAB9BQ9NP90 201 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 POMT2Q9UKY4 750 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 PADI1Q9ULC6 663 aa8.05□□□□□ -1.12
LIMCH1-218ENST00000513024 TRAV27A0A087WT01 109 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 A0A1W2PP55 124 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ACOT8O14734 319 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF865P0CJ78 1059 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 AMTP48728 403 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 UCNP55089 124 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 FOXO1Q12778 655 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ECH1Q13011 328 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ALKBH1Q13686 389 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC16A12Q6ZSM3 486 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 MRPL43Q8N983 215 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR8D4Q8NGM9 314 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR4F5Q8NH21 305 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 UBE2FQ969M7 185 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 PEX11GQ96HA9 241 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF583Q96ND8 569 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR4F4Q96R69 305 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 NXF5Q9H1B4 397 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 FKRPQ9H9S5 495 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC23A1Q9UHI7 598 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 A0A0A6YYJ9 748 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 FBLL1A6NHQ2 334 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ADAMTS4O75173 837 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 CD99P14209 185 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 GLULP15104 373 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 CD38P28907 300 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 LIPAP38571 399 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 EFNA3P52797 238 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 PPP1CBP62140 327 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SHHQ15465 462 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM97Q5BJF2 176 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 RNLSQ5VYX0 342 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 TMPRSS11FQ6ZWK6 438 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 DCXRQ7Z4W1 244 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR5AP2Q8NGF4 316 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR5A2Q8NGI9 324 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR5L1Q8NGL2 311 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 CMTM2Q8TAZ6 248 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 LHX4Q969G2 390 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 FAM210BQ96KR6 192 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 FOXN4Q96NZ1 517 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SMIM14Q96QK8 99 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ATOH8Q96SQ7 321 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ATF6BQ99941 703 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ATG101Q9BSB4 218 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 GPR87Q9BY21 358 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 CACNA1CQ13936 2221 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF840PA6NDX5 716 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 C5orf52A6NGY3 159 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 FTCDNL1E5RQL4 147 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC16A6O15403 523 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 GLSO94925 669 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SULT1A3P0DMM9 295 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SULT1A4P0DMN0 295 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 PIGAP37287 484 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 CLDN20P56880 219 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 NHLH1Q02575 133 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 NHLH2Q02577 135 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR2B11Q5JQS5 317 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF322Q6U7Q0 402 aaPredicted RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms