RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 ATP23Q9Y6H3 246 aa12.73□□□□□ -0.37
LIMS3-205ENST00000487150 IGKV1D-43A0A0B4J1Z2 117 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 IGHV2OR16-5A0A0B4J2B6 119 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 ATP6V1G2-DDX39BF2Z307 99 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 SNAP29O95721 258 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 PLAUP00749 431 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 HMGN1P05114 100 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 CD53P19397 219 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 APLNRP35414 380 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 CDKN2AP42771 156 aaKnown RBP12.72□□□□□ -0.37
LIMS3-205ENST00000487150 ESRRGP62508 458 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 PIGFQ07326 219 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIMS3-205ENST00000487150 DEFB113Q30KQ7 82 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 FAHD1Q6P587 224 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 PTCHD4Q6ZW05 846 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 C1orf174Q8IYL3 243 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 LRRC18Q8N456 261 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 SLC30A7Q8NEW0 376 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 SDR9C7Q8NEX9 313 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 IPCEF1Q8WWN9 437 aaPredicted RBP12.72□□□□□ -0.37
LIMS3-205ENST00000487150 FOXC2Q99958 501 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 PLA2G12AQ9BZM1 189 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 RERGLQ9H628 205 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 ZNF442Q9H7R0 627 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 NTN4Q9HB63 628 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 CDH20Q9HBT6 801 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 RPRD1BQ9NQG5 326 aaKnown RBP12.72□□□□□ -0.37
LIMS3-205ENST00000487150 CMC2Q9NRP2 79 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 ZNF224Q9NZL3 707 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 ATPIF1Q9UII2 106 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 NDRG4Q9ULP0 352 aaKnown RBP12.72□□□□□ -0.37
LIMS3-205ENST00000487150 ABCA4P78363 2273 aa12.72□□□□□ -0.37
LIMS3-205ENST00000487150 ZNF503-AS2A6NEH8 195 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 SMPD2O60906 423 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 POU1F1P28069 291 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 SLC25A1P53007 311 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 SPOCK1Q08629 439 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 KCNMB1Q16558 191 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 ZSCAN26Q16670 478 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 SLC35F1Q5T1Q4 408 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 ARL9Q6T311 187 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 TMEM179BQ7Z7N9 219 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 DTX2Q86UW9 622 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 ZBTB46Q86UZ6 589 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 LRRC75A-AS1Q8N1F1 130 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 NPEPL1Q8NDH3 523 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 PROKR2Q8NFJ6 384 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 OR10H5Q8NGA6 315 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 OR8D4Q8NGM9 314 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 PYDC1Q8WXC3 89 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 LRTOMTQ8WZ04 291 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 PLEKHA8Q96JA3 519 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 CA10Q9NS85 328 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 KRT84Q9NSB2 600 aa12.71□□□□□ -0.37
LIMS3-205ENST00000487150 IGLV1-36A0A0B4J1U3 117 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 MMP7P09237 267 aaPredicted RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 COX5BP10606 129 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 ZNF32P17041 273 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 APOBEC3AP31941 199 aaPredicted RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 TTKP33981 857 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 GDI2P50395 445 aaKnown RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 FABP6P51161 128 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 DAG1Q14118 895 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 RAB39AQ14964 217 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 PABPC1L2AQ5JQF8 200 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 HS3ST5Q8IZT8 346 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 MUC15Q8N387 334 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 LILRB1Q8NHL6 650 aaPredicted RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 NRGNQ92686 78 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 TRMT61AQ96FX7 289 aaKnown RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 RBM4BQ9BQ04 359 aaKnown RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 RBM4Q9BWF3 364 aaKnown RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 OR2H1Q9GZK4 316 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 NOX3Q9HBY0 568 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 SLC25A19Q9HC21 320 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 CBLN4Q9NTU7 201 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 EIF3KQ9UBQ5 218 aaKnown RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 REV1Q9UBZ9 1251 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 B9D1Q9UPM9 204 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 COA3Q9Y2R0 106 aaPredicted RBP12.7□□□□□ -0.38
LIMS3-205ENST00000487150 ORC6Q9Y5N6 252 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 APCP25054 2843 aa12.7□□□□□ -0.38
LIMS3-205ENST00000487150 DCHS2Q6V1P9 2916 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 CYSRT1A8MQ03 144 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 E7EQL1 145 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 HLA-DQA2P01906 255 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 CELA3BP08861 270 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 DANCRP0C864 163 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 PRKACGP22612 351 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 IGFBP5P24593 272 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 STOMP27105 288 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 PCSK6P29122 969 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 RAD52P43351 418 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 SNRPD2P62316 118 aaKnown RBP12.69□□□□□ -0.38
LIMS3-205ENST00000487150 SNTB2Q13425 540 aaKnown RBP12.69□□□□□ -0.38
LIMS3-205ENST00000487150 CRMP1Q14194 572 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 ENDOGQ14249 297 aaKnown RBP12.69□□□□□ -0.38
LIMS3-205ENST00000487150 ETFDHQ16134 617 aa12.69□□□□□ -0.38
LIMS3-205ENST00000487150 AMIGO2Q86SJ2 522 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms