RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SRSF1Q07955 248 aaKnown RBP eCLIP10.73□□□□□ -0.69
SDC1-206ENST00000482879 MEP1BQ16820 701 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 TBRG1Q3YBR2 411 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 OTPQ5XKR4 325 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 OR7E24Q6IFN5 339 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 UGT2A3Q6UWM9 527 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 LYPD4Q6UWN0 246 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 ZNF627Q7L945 461 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 LRRC18Q8N456 261 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 SLC22A24Q8N4F4 322 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 C1orf162Q8NEQ5 155 aaPredicted RBP10.73□□□□□ -0.69
SDC1-206ENST00000482879 STEAP2Q8NFT2 490 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 SLC26A10Q8NG04 563 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 OR10H5Q8NGA6 315 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 FBLIM1Q8WUP2 373 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 C11orf40Q8WZ69 217 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 NABP1Q96AH0 204 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 SH3GL3Q99963 347 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 NELFAQ9H3P2 528 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 EMC7Q9NPA0 242 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 MRPL22Q9NWU5 206 aaKnown RBP10.73□□□□□ -0.69
SDC1-206ENST00000482879 WARS2Q9UGM6 360 aaKnown RBP10.73□□□□□ -0.69
SDC1-206ENST00000482879 LRRC42Q9Y546 428 aa10.73□□□□□ -0.69
SDC1-206ENST00000482879 SPTAN1Q13813 2472 aaKnown RBP10.72□□□□□ -0.69
SDC1-206ENST00000482879 SH3D21A4FU49 640 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 WIPF3A6NGB9 483 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 HRGP04196 525 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 UGT2B10P36537 528 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 CAPZA2P47755 286 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 NUDT6P53370 316 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 UBE2NP61088 152 aaKnown RBP10.72□□□□□ -0.69
SDC1-206ENST00000482879 LSM6P62312 80 aaKnown RBP10.72□□□□□ -0.69
SDC1-206ENST00000482879 TMED1Q13445 227 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 KCNMB1Q16558 191 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 SMN1Q16637 294 aaKnown RBP10.72□□□□□ -0.69
SDC1-206ENST00000482879 NRN1LQ496H8 165 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 HIKESHIQ53FT3 197 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 FAM27BQ5VT28 67 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 KRT80Q6KB66 452 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 ERI1Q8IV48 349 aaKnown RBP10.72□□□□□ -0.69
SDC1-206ENST00000482879 SKA3Q8IX90 412 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 CDADC1Q9BWV3 514 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 ACTR6Q9GZN1 396 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 KCNN2Q9H2S1 579 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 WDR76Q9H967 626 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 AMBNQ9NP70 447 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 SLC17A5Q9NRA2 495 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.72□□□□□ -0.69
SDC1-206ENST00000482879 POLR1DQ9Y2S0 133 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 RPL36Q9Y3U8 105 aaKnown RBP10.72□□□□□ -0.69
SDC1-206ENST00000482879 DOPEY1Q5JWR5 2465 aa10.72□□□□□ -0.69
SDC1-206ENST00000482879 OR5H1A6NKK0 313 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 ZNF593O00488 134 aaPredicted RBP10.71□□□□□ -0.69
SDC1-206ENST00000482879 SELENOFO60613 162 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 UBR5O95071 2799 aaPredicted RBP10.71□□□□□ -0.69
SDC1-206ENST00000482879 MRPL3P09001 348 aaKnown RBP10.71□□□□□ -0.69
SDC1-206ENST00000482879 CST2P09228 141 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 RNF224P0DH78 156 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 HOXB1P14653 301 aaPredicted RBP10.71□□□□□ -0.69
SDC1-206ENST00000482879 GRNP28799 593 aaKnown RBP10.71□□□□□ -0.69
SDC1-206ENST00000482879 HOXC12P31275 282 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 ATP6V1E1P36543 226 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 MTNR1AP48039 350 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 ENTPD1P49961 510 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 TUBA1BP68363 451 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 TUBA4AP68366 448 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 ADAM8P78325 824 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 TFF3Q07654 80 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 MED21Q13503 144 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 ENDOGQ14249 297 aaKnown RBP10.71□□□□□ -0.69
SDC1-206ENST00000482879 C6orf141Q5SZD1 244 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 LAIR2Q6ISS4 152 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 TUBA1AQ71U36 451 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 SLC16A14Q7RTX9 510 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 TIGD4Q8IY51 512 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 CCDC36Q8IYA8 594 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 C17orf78Q8N4C9 275 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 WDR31Q8NA23 367 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 BPIFB6Q8NFQ5 453 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 OR51G2Q8NGK0 314 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 OR6N2Q8NGY6 317 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 SSC4DQ8WTU2 575 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 S100PBPQ96BU1 408 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 RNFT2Q96EX2 444 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 BOD1Q96IK1 185 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 INTS14Q96SY0 518 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 USB1Q9BQ65 265 aaKnown RBP10.71□□□□□ -0.69
SDC1-206ENST00000482879 ZNF416Q9BWM5 594 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 RNF121Q9H920 327 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 MARCH7Q9H992 704 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 HAO2Q9NYQ3 351 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 COMMD3-BMI1R4GMX3 469 aa10.71□□□□□ -0.69
SDC1-206ENST00000482879 A0A1W2PR80 420 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 C12orf71A8MTZ7 269 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 TMCC2O75069 709 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 APOL3O95236 402 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 HLA-HP01893 362 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 SPARCP09486 303 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 PATE4P0C8F1 98 aa10.7□□□□□ -0.7
SDC1-206ENST00000482879 DBTP11182 482 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms