RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 PAQR4Q8N4S7 273 aaPredicted RBP13.46□□□□□ -0.25
HMGA1-206ENST00000478214 LINC00471Q8N535 108 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 SLC30A7Q8NEW0 376 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 C18orf12Q96KH6 178 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 FOXN4Q96NZ1 517 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 IFT27Q9BW83 186 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 SYT4Q9H2B2 425 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 RERGLQ9H628 205 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 REEP1Q9H902 201 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 CCNB1IP1Q9NPC3 277 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 VSX1Q9NZR4 365 aaPredicted RBP13.46□□□□□ -0.25
HMGA1-206ENST00000478214 POMPQ9Y244 141 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 PMF1-BGLAPU3KQ54 211 aa13.46□□□□□ -0.25
HMGA1-206ENST00000478214 IQCMA0A1B0GVH7 501 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 VSTM5A8MXK1 200 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 SSX4O60224 188 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 SLC16A7O60669 478 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 CST2P09228 141 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 MSR1P21757 451 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 APEX1P27695 318 aaKnown RBP13.45□□□□□ -0.26
HMGA1-206ENST00000478214 GUCA1AP43080 201 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-206ENST00000478214 SNRPD2P62316 118 aaKnown RBP13.45□□□□□ -0.26
HMGA1-206ENST00000478214 GALK2Q01415 458 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 HSF2Q03933 536 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 ENDOGQ14249 297 aaKnown RBP13.45□□□□□ -0.26
HMGA1-206ENST00000478214 EFNB3Q15768 340 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 UGT2A3Q6UWM9 527 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 SVOPLQ8N434 492 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 AQP11Q8NBQ7 271 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 CPEB3Q8NE35 698 aaKnown RBP13.45□□□□□ -0.26
HMGA1-206ENST00000478214 AKR7LQ8NHP1 331 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 BDH2Q9BUT1 245 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 NUAK2Q9H093 628 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 EGLN3Q9H6Z9 239 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 BARX1Q9HBU1 254 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-206ENST00000478214 EMC7Q9NPA0 242 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 POLE4Q9NR33 117 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 SPEF1Q9Y4P9 236 aa13.45□□□□□ -0.26
HMGA1-206ENST00000478214 TMEM129A0AVI4 362 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 SMAD7O15105 426 aaKnown RBP13.44□□□□□ -0.26
HMGA1-206ENST00000478214 ARPC3O15145 178 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 KHDRBS3O75525 346 aaKnown RBP13.44□□□□□ -0.26
HMGA1-206ENST00000478214 CST1P01037 141 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 PTHP01270 115 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 INHBBP09529 407 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 GLRXP35754 106 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 ERFP50548 548 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 NUDT6P53370 316 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 PSG4Q00888 419 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 DBPQ10586 325 aaPredicted RBP13.44□□□□□ -0.26
HMGA1-206ENST00000478214 TNK1Q13470 666 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 MICAQ29983 383 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 CLEC12AQ5QGZ9 265 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 OTPQ5XKR4 325 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 OR4K13Q8NH42 304 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 COX4I2Q96KJ9 171 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 TSSK2Q96PF2 358 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 SMR3AQ99954 134 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 ZNF416Q9BWM5 594 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 WNT5BQ9H1J7 359 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 C1orf198Q9H425 327 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 PLK3Q9H4B4 646 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 GSX1Q9H4S2 264 aaPredicted RBP13.44□□□□□ -0.26
HMGA1-206ENST00000478214 CDH20Q9HBT6 801 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 SLC7A8Q9UHI5 535 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 COA3Q9Y2R0 106 aaPredicted RBP13.44□□□□□ -0.26
HMGA1-206ENST00000478214 CMAHPQ9Y471 501 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 CDH10Q9Y6N8 788 aa13.44□□□□□ -0.26
HMGA1-206ENST00000478214 DCTN6O00399 190 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 LY6HO94772 140 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 IGFBP1P08833 259 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-206ENST00000478214 FAM157BP0CG42 384 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 HIST1H1CP16403 213 aaKnown RBP13.43□□□□□ -0.26
HMGA1-206ENST00000478214 APLNRP35414 380 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 TBC1D28Q2M2D7 210 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 LEG1Q6P5S2 330 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 DNM1P46Q6ZS02 220 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 RASSF6Q6ZTQ3 369 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 OR8D4Q8NGM9 314 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 OR1J2Q8NGS2 313 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 MRPL24Q96A35 216 aaKnown RBP13.43□□□□□ -0.26
HMGA1-206ENST00000478214 SORCS2Q96PQ0 1159 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 NMNAT3Q96T66 252 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 DOK1Q99704 481 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 VRK1Q99986 396 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-206ENST00000478214 MRPL37Q9BZE1 423 aaKnown RBP13.43□□□□□ -0.26
HMGA1-206ENST00000478214 PLA2G12AQ9BZM1 189 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 OR2H1Q9GZK4 316 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 OR51B6Q9H340 312 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 TIMM10BQ9Y5J6 103 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 RTTNQ86VV8 2226 aa13.43□□□□□ -0.26
HMGA1-206ENST00000478214 ZFHX3Q15911 3703 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 ARFGEF3Q5TH69 2177 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 LOC100509620A0A075B734 347 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 TCRBV3S1A0A5B6 114 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 C12orf71A8MTZ7 269 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 ATP5HO75947 161 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 MPZL1O95297 269 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 SNAP29O95721 258 aa13.42□□□□□ -0.26
HMGA1-206ENST00000478214 GPANK1O95872 356 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms