RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ATP23Q9Y6H3 246 aa12.73□□□□□ -0.37
LIMS1-206ENST00000414829 IGKV1D-43A0A0B4J1Z2 117 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 IGHV2OR16-5A0A0B4J2B6 119 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 ATP6V1G2-DDX39BF2Z307 99 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 SNAP29O95721 258 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 PLAUP00749 431 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 HMGN1P05114 100 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 CD53P19397 219 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 APLNRP35414 380 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 CDKN2AP42771 156 aaKnown RBP12.72□□□□□ -0.37
LIMS1-206ENST00000414829 ESRRGP62508 458 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 PIGFQ07326 219 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIMS1-206ENST00000414829 DEFB113Q30KQ7 82 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 FAHD1Q6P587 224 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 PTCHD4Q6ZW05 846 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 C1orf174Q8IYL3 243 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 LRRC18Q8N456 261 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 SLC30A7Q8NEW0 376 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 SDR9C7Q8NEX9 313 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 IPCEF1Q8WWN9 437 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-206ENST00000414829 FOXC2Q99958 501 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 PLA2G12AQ9BZM1 189 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 RERGLQ9H628 205 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 ZNF442Q9H7R0 627 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 NTN4Q9HB63 628 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 CDH20Q9HBT6 801 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 RPRD1BQ9NQG5 326 aaKnown RBP12.72□□□□□ -0.37
LIMS1-206ENST00000414829 CMC2Q9NRP2 79 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 ZNF224Q9NZL3 707 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 ATPIF1Q9UII2 106 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 NDRG4Q9ULP0 352 aaKnown RBP12.72□□□□□ -0.37
LIMS1-206ENST00000414829 ABCA4P78363 2273 aa12.72□□□□□ -0.37
LIMS1-206ENST00000414829 ZNF503-AS2A6NEH8 195 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 SMPD2O60906 423 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 POU1F1P28069 291 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 SLC25A1P53007 311 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 SPOCK1Q08629 439 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 KCNMB1Q16558 191 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 ZSCAN26Q16670 478 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 SLC35F1Q5T1Q4 408 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 ARL9Q6T311 187 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 TMEM179BQ7Z7N9 219 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 DTX2Q86UW9 622 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 ZBTB46Q86UZ6 589 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 LRRC75A-AS1Q8N1F1 130 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 NPEPL1Q8NDH3 523 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 PROKR2Q8NFJ6 384 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 OR10H5Q8NGA6 315 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 OR8D4Q8NGM9 314 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 PYDC1Q8WXC3 89 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 LRTOMTQ8WZ04 291 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 PLEKHA8Q96JA3 519 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 CA10Q9NS85 328 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 KRT84Q9NSB2 600 aa12.71□□□□□ -0.37
LIMS1-206ENST00000414829 IGLV1-36A0A0B4J1U3 117 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 MMP7P09237 267 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 COX5BP10606 129 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 ZNF32P17041 273 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 APOBEC3AP31941 199 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 TTKP33981 857 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 GDI2P50395 445 aaKnown RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 FABP6P51161 128 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 DAG1Q14118 895 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 RAB39AQ14964 217 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 PABPC1L2AQ5JQF8 200 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 HS3ST5Q8IZT8 346 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 MUC15Q8N387 334 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 LILRB1Q8NHL6 650 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 NRGNQ92686 78 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 TRMT61AQ96FX7 289 aaKnown RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 RBM4BQ9BQ04 359 aaKnown RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 RBM4Q9BWF3 364 aaKnown RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 OR2H1Q9GZK4 316 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 NOX3Q9HBY0 568 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 SLC25A19Q9HC21 320 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 CBLN4Q9NTU7 201 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 EIF3KQ9UBQ5 218 aaKnown RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 REV1Q9UBZ9 1251 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 B9D1Q9UPM9 204 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 COA3Q9Y2R0 106 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-206ENST00000414829 ORC6Q9Y5N6 252 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 APCP25054 2843 aa12.7□□□□□ -0.38
LIMS1-206ENST00000414829 DCHS2Q6V1P9 2916 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 CYSRT1A8MQ03 144 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 E7EQL1 145 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 HLA-DQA2P01906 255 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 CELA3BP08861 270 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 DANCRP0C864 163 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 PRKACGP22612 351 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 IGFBP5P24593 272 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 STOMP27105 288 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 PCSK6P29122 969 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 RAD52P43351 418 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 SNRPD2P62316 118 aaKnown RBP12.69□□□□□ -0.38
LIMS1-206ENST00000414829 SNTB2Q13425 540 aaKnown RBP12.69□□□□□ -0.38
LIMS1-206ENST00000414829 CRMP1Q14194 572 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 ENDOGQ14249 297 aaKnown RBP12.69□□□□□ -0.38
LIMS1-206ENST00000414829 ETFDHQ16134 617 aa12.69□□□□□ -0.38
LIMS1-206ENST00000414829 AMIGO2Q86SJ2 522 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms