RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 APH1AQ96BI3 265 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 NIPSNAP3BQ9BS92 247 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF576Q9H609 170 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 MED9Q9NWA0 146 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 NWD2Q9ULI1 1742 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 RRP8O43159 456 aaKnown RBP12.58□□□□□ -0.4
COL4A1-201ENST00000375820 ACKR3P25106 362 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 PRAMEF5Q5TYX0 476 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 PRAMEF6Q5VXH4 476 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 SSX7Q7RTT5 188 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 WFDC8Q8IUA0 241 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 KCNRGQ8N5I3 272 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 EXOSC3Q9NQT5 275 aaKnown RBP12.58□□□□□ -0.4
COL4A1-201ENST00000375820 USP3Q9Y6I4 520 aa12.58□□□□□ -0.4
COL4A1-201ENST00000375820 LOXHD1Q8IVV2 1947 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 TCAPO15273 167 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 TEAD1P28347 426 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 KCTD11Q693B1 232 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 CCDC74AQ96AQ1 378 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 CTSFQ9UBX1 484 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 KCNG2Q9UJ96 466 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 A0A087WV62 115 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 C5orf49A4QMS7 147 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 CSNK1G2P78368 415 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 TOR2AQ5JU69 321 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 SPANXN5Q5MJ07 72 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 SKA3Q8IX90 412 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 LRRC56Q8IYG6 542 aaPredicted RBP12.57□□□□□ -0.4
COL4A1-201ENST00000375820 SEMA6DQ8NFY4 1073 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 NANPQ8TBE9 248 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 RNF141Q8WVD5 230 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 CSNK1G1Q9HCP0 422 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 H0YIV9 168 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 KLRC4-KLRK1H3BQV0 150 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 CD63P08962 238 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 ALOX5APP20292 161 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 LIPAP38571 399 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 DUSP5Q16690 384 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 Q6ZSR9 355 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 TMUB2Q71RG4 321 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 PLA2G12AQ9BZM1 189 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 C6orf106Q9H6K1 298 aaPredicted RBP12.57□□□□□ -0.4
COL4A1-201ENST00000375820 SLC23A1Q9UHI7 598 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 PADI1Q9ULC6 663 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 RGPD8O14715 1765 aaPredicted RBP12.57□□□□□ -0.4
COL4A1-201ENST00000375820 MEX3AA1L020 520 aaKnown RBP12.57□□□□□ -0.4
COL4A1-201ENST00000375820 WNT11O96014 354 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 CPT2P23786 658 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 ETV1P50549 477 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 UBE2G1P62253 170 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 BAMBIQ13145 260 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM178AQ8NBL3 297 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 IFI44Q8TCB0 444 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 ZNRF4Q8WWF5 429 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 CR2P20023 1033 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 TGFBR1P36897 503 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 ARL2-SNX15V9GYD0 113 aa12.57□□□□□ -0.4
COL4A1-201ENST00000375820 M0R082 166 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 TOX4O94842 621 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 HBE1P02100 147 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 KLKB1P03952 638 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 OR5G3P0C626 314 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 MTNR1BP49286 362 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 MPPED2Q15777 294 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 ZMAT1Q5H9K5 638 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 AVPI1Q5T686 147 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 SLC48A1Q6P1K1 146 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 PAQR6Q6TCH4 344 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 RDH5Q92781 318 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 SLC46A1Q96NT5 459 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 F6UZH7 168 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 HLA-HP01893 362 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 IL3RAP26951 378 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 CD1CP29017 333 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 RPS16P62249 146 aaKnown RBP12.56□□□□□ -0.4
COL4A1-201ENST00000375820 GLCCI1Q86VQ1 547 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM200AQ86VY9 491 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 NARFLQ9H6Q4 476 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 LTB4R2Q9NPC1 389 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 CSAG2Q9Y5P2 127 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 LRP5LA4QPB2 252 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 GPRIN2O60269 458 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 CTNSO60931 367 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 MMP11P24347 488 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 LCN15Q6UWW0 184 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM99Q8N816 258 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 P2RY12Q9H244 342 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 RIMS4Q9H426 269 aaPredicted RBP12.56□□□□□ -0.4
COL4A1-201ENST00000375820 SIAEQ9HAT2 523 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 A4GALTQ9NPC4 353 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 TRABD2BA6NFA1 517 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF724A8MTY0 619 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF701M0R085 212 aaPredicted RBP12.56□□□□□ -0.4
COL4A1-201ENST00000375820 TNFSF11O14788 317 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 QDPRP09417 244 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 IRS1P35568 1242 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 YPEL5P62699 121 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 PLPPR2Q96GM1 343 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 ZIC5Q96T25 663 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 TCEAL7Q9BRU2 100 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms