RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MAPKBP1O60336 1514 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 TIAM1Q13009 1591 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 PI4KAP2A4QPH2 592 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 IFIT3O14879 490 aaKnown RBP5.81□□□□□ -1.48
SCN1A-218ENST00000640036 RAD17O75943 681 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 MFSD6Q6ZSS7 791 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 PI4KAP1Q8N8J0 262 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 SMC1BQ8NDV3 1235 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 SLC17A8Q8NDX2 589 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 FTOQ9C0B1 505 aaKnown RBP eCLIP5.81□□□□□ -1.48
SCN1A-218ENST00000640036 KDM5CP41229 1560 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 UQCRHLA0A096LP55 91 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 KIF20AO95235 890 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 ZYXQ15942 572 aaKnown RBP5.81□□□□□ -1.48
SCN1A-218ENST00000640036 CCDC181Q5TID7 509 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 KIAA0825Q8IV33 1275 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 NBPF15Q8N660 670 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 EXOC4Q96A65 974 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 LNPKQ9C0E8 428 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 CWC15Q9P013 229 aaKnown RBP5.81□□□□□ -1.48
SCN1A-218ENST00000640036 CEP131Q9UPN4 1083 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 MAGEB6P1A0A0J9YX57 407 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 SYCP3Q8IZU3 236 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 SSX2IPQ9Y2D8 614 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 BIVM-ERCC5R4GMW8 1640 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 SMC1AQ14683 1233 aaKnown RBP5.81□□□□□ -1.48
SCN1A-218ENST00000640036 ZNF790Q6PG37 636 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 NCAPG2Q86XI2 1143 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 ZNF354CQ86Y25 554 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 FERMT1Q9BQL6 677 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 FOXD4L1Q9NU39 408 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 RNMTO43148 476 aaKnown RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 IL15P40933 162 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 DOK7Q18PE1 504 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ZFYVE28Q9HCC9 887 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 PLEKHG1Q9ULL1 1385 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 GOLGA6L7A0A1B0GV03 622 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 USPL1Q5W0Q7 1092 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 CPXCR1Q8N123 301 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 PCF11O94913 1555 aaKnown RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 TFRCP02786 760 aaKnown RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ZFYP08048 801 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 HUNKP57058 714 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ARID5AQ03989 594 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ANKRD35Q8N283 1001 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 SLC12A7Q9Y666 1083 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 POLR3AO14802 1390 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ODR4Q5SWX8 454 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 KIAA1841Q6NSI8 718 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 HOMER1Q86YM7 354 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 SDF4Q9BRK5 362 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 THUMPD2Q9BTF0 503 aaKnown RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 BOLA2Q9H3K6 86 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ARGLU1Q9NWB6 273 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 PTPDC1A2A3K4 754 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 BCAMP50895 628 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 GTPBP6O43824 516 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-218ENST00000640036 SP4Q02446 784 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 FILIP1LQ4L180 1135 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 MFSD14BQ5SR56 506 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 CHURC1Q8WUH1 139 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ESR2Q92731 530 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 MAP7D2Q96T17 732 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 UBA5Q9GZZ9 404 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ABCA5Q8WWZ7 1642 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ABCC11Q96J66 1382 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 WDR17Q8IZU2 1322 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 ANKRD62A6NC57 917 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 GNAT2P19087 354 aa5.8□□□□□ -1.48
SCN1A-218ENST00000640036 LMNB1P20700 586 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 C1orf228Q6PIY5 440 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 BLOC1S2Q6QNY1 142 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 TXLNBQ8N3L3 684 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 ZNF396Q96N95 335 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-218ENST00000640036 JAG2Q9Y219 1238 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 KBTBD13C9JR72 458 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 GRM8O00222 908 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 ANAPC15P60006 121 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 FLIIQ13045 1269 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 NKTRP30414 1462 aaKnown RBP5.79□□□□□ -1.48
SCN1A-218ENST00000640036 TCP10L2B9ZVM9 353 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 KCNJ6P48051 423 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 GNPTABQ3T906 1256 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 LMBR1LQ6UX01 489 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 MTERF4Q7Z6M4 381 aaKnown RBP5.79□□□□□ -1.48
SCN1A-218ENST00000640036 CPLX3Q8WVH0 158 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 IMPG2Q9BZV3 1241 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 MYO3BQ8WXR4 1341 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 STX6O43752 255 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 PHACTR2O75167 634 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 HS1BP3Q53T59 392 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 RUFY4Q6ZNE9 571 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 TMTC2Q8N394 836 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 FAM13BQ9NYF5 915 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 CCDC39Q9UFE4 941 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 ANKRD36BQ8N2N9 1353 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 EZRP15311 586 aaKnown RBP5.79□□□□□ -1.48
SCN1A-218ENST00000640036 SLC8A3P57103 927 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 TSR2Q969E8 191 aaKnown RBP5.79□□□□□ -1.48
SCN1A-218ENST00000640036 GTF3C6Q969F1 213 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms