RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 NEUROD6Q96NK8 337 aa23.3■■□□□ 1.32
CLN3-258ENST00000637184 BRIP1Q9BX63 1249 aa23.3■■□□□ 1.32
CLN3-258ENST00000637184 TLR7Q9NYK1 1049 aaKnown RBP23.3■■□□□ 1.32
CLN3-258ENST00000637184 ERC2O15083 957 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 RPS8P62241 208 aaKnown RBP23.29■■□□□ 1.32
CLN3-258ENST00000637184 CRY2Q49AN0 593 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 BSDC1Q9NW68 430 aaPredicted RBP23.29■■□□□ 1.32
CLN3-258ENST00000637184 ZNF609O15014 1411 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 A0A1B0GUL7 405 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 PDE8BO95263 885 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 TIMM10P62072 90 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 C8orf34Q49A92 452 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 BACH2Q9BYV9 841 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 DBNLQ9UJU6 430 aaKnown RBP23.29■■□□□ 1.32
CLN3-258ENST00000637184 COL4A1P02462 1669 aa23.29■■□□□ 1.32
CLN3-258ENST00000637184 VGLL2Q8N8G2 317 aa23.28■■□□□ 1.32
CLN3-258ENST00000637184 PI4K2BQ8TCG2 481 aa23.28■■□□□ 1.32
CLN3-258ENST00000637184 ANKRD31Q8N7Z5 1873 aa23.27■■□□□ 1.32
CLN3-258ENST00000637184 KLRG2A4D1S0 409 aaPredicted RBP23.27■■□□□ 1.32
CLN3-258ENST00000637184 GLRX3O76003 335 aaKnown RBP23.27■■□□□ 1.32
CLN3-258ENST00000637184 DBNDD2Q9BQY9 259 aa23.27■■□□□ 1.32
CLN3-258ENST00000637184 ATP2B3Q16720 1220 aa23.27■■□□□ 1.32
CLN3-258ENST00000637184 CHRNDQ07001 517 aa23.26■■□□□ 1.31
CLN3-258ENST00000637184 GRAPQ13588 217 aa23.26■■□□□ 1.31
CLN3-258ENST00000637184 HELBQ8NG08 1087 aaPredicted RBP23.26■■□□□ 1.31
CLN3-258ENST00000637184 GRAPLQ8TC17 118 aaPredicted RBP23.26■■□□□ 1.31
CLN3-258ENST00000637184 RBM17Q96I25 401 aaKnown RBP23.26■■□□□ 1.31
CLN3-258ENST00000637184 SDSP20132 328 aa23.25■■□□□ 1.31
CLN3-258ENST00000637184 PDE6BP35913 854 aa23.25■■□□□ 1.31
CLN3-258ENST00000637184 PUM3Q15397 648 aaKnown RBP23.24■■□□□ 1.31
CLN3-258ENST00000637184 TRIM6-TRIM34B2RNG4 842 aa23.24■■□□□ 1.31
CLN3-258ENST00000637184 HOXA10P31260 410 aaPredicted RBP23.24■■□□□ 1.31
CLN3-258ENST00000637184 MINPP1Q9UNW1 487 aa23.24■■□□□ 1.31
CLN3-258ENST00000637184 TAF5LO75529 589 aa23.23■■□□□ 1.31
CLN3-258ENST00000637184 XAGE2Q96GT9 111 aa23.23■■□□□ 1.31
CLN3-258ENST00000637184 GORABQ5T7V8 394 aa23.22■■□□□ 1.31
CLN3-258ENST00000637184 ATP5JP18859 108 aa23.22■■□□□ 1.31
CLN3-258ENST00000637184 R3HDM1Q15032 1099 aaKnown RBP23.22■■□□□ 1.31
CLN3-258ENST00000637184 LPIN2Q92539 896 aa23.22■■□□□ 1.31
CLN3-258ENST00000637184 RILPL2Q969X0 211 aa23.22■■□□□ 1.31
CLN3-258ENST00000637184 CRAMP1Q96RY5 1269 aa23.22■■□□□ 1.31
CLN3-258ENST00000637184 TSHZ2Q9NRE2 1034 aa23.22■■□□□ 1.31
CLN3-258ENST00000637184 SRGNP10124 158 aa23.21■■□□□ 1.31
CLN3-258ENST00000637184 FGFR2P21802 821 aa23.21■■□□□ 1.31
CLN3-258ENST00000637184 CCDC158Q5M9N0 1113 aa23.21■■□□□ 1.31
CLN3-258ENST00000637184 A0A1B0GUL6 1792 aa23.21■■□□□ 1.31
CLN3-258ENST00000637184 CDC45O75419 566 aa23.2■■□□□ 1.3
CLN3-258ENST00000637184 SLC5A1P13866 664 aa23.2■■□□□ 1.3
CLN3-258ENST00000637184 ADORA1P30542 326 aa23.2■■□□□ 1.3
CLN3-258ENST00000637184 ANKRD2Q9GZV1 360 aa23.2■■□□□ 1.3
CLN3-258ENST00000637184 BOLA2Q9H3K6 86 aa23.2■■□□□ 1.3
CLN3-258ENST00000637184 AK9Q5TCS8 1911 aa23.2■■□□□ 1.3
CLN3-258ENST00000637184 MAP4K4O95819 1239 aaPredicted RBP23.19■■□□□ 1.3
CLN3-258ENST00000637184 NPR1P16066 1061 aa23.19■■□□□ 1.3
CLN3-258ENST00000637184 CNTROBQ8N137 903 aa23.19■■□□□ 1.3
CLN3-258ENST00000637184 BBOX1O75936 387 aa23.19■■□□□ 1.3
CLN3-258ENST00000637184 IFIT1P09914 478 aaKnown RBP23.19■■□□□ 1.3
CLN3-258ENST00000637184 ARAP2Q8WZ64 1704 aa23.18■■□□□ 1.3
CLN3-258ENST00000637184 ZBTB7AO95365 584 aa23.18■■□□□ 1.3
CLN3-258ENST00000637184 MTFR1LQ9H019 292 aa23.18■■□□□ 1.3
CLN3-258ENST00000637184 TTC39AQ5SRH9 613 aa23.17■■□□□ 1.3
CLN3-258ENST00000637184 MASTLQ96GX5 879 aa23.17■■□□□ 1.3
CLN3-258ENST00000637184 COL11A2P13942 1736 aaPredicted RBP23.17■■□□□ 1.3
CLN3-258ENST00000637184 SNAP23O00161 211 aa23.17■■□□□ 1.3
CLN3-258ENST00000637184 ALDH1B1P30837 517 aa23.17■■□□□ 1.3
CLN3-258ENST00000637184 UBE4AQ14139 1066 aa23.17■■□□□ 1.3
CLN3-258ENST00000637184 CASC1Q6TDU7 716 aa23.17■■□□□ 1.3
CLN3-258ENST00000637184 TBC1D9Q6ZT07 1266 aa23.17■■□□□ 1.3
CLN3-258ENST00000637184 H0YIN7 160 aa23.16■■□□□ 1.3
CLN3-258ENST00000637184 C2CD5Q86YS7 1000 aa23.16■■□□□ 1.3
CLN3-258ENST00000637184 EVI5LQ96CN4 794 aa23.16■■□□□ 1.3
CLN3-258ENST00000637184 KCNJ4P48050 445 aa23.15■■□□□ 1.3
CLN3-258ENST00000637184 TMC4Q7Z404 712 aa23.15■■□□□ 1.3
CLN3-258ENST00000637184 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.15■■□□□ 1.3
CLN3-258ENST00000637184 HAUS7Q99871 368 aa23.15■■□□□ 1.3
CLN3-258ENST00000637184 ILDR2Q71H61 639 aa23.14■■□□□ 1.3
CLN3-258ENST00000637184 ATF5Q9Y2D1 282 aaPredicted RBP23.14■■□□□ 1.3
CLN3-258ENST00000637184 POLD1P28340 1107 aa23.14■■□□□ 1.29
CLN3-258ENST00000637184 ZNF622Q969S3 477 aaKnown RBP eCLIP23.14■■□□□ 1.29
CLN3-258ENST00000637184 DNAJC2Q99543 621 aaKnown RBP23.14■■□□□ 1.29
CLN3-258ENST00000637184 ANKIB1Q9P2G1 1089 aa23.14■■□□□ 1.29
CLN3-258ENST00000637184 C10orf71Q711Q0 1435 aa23.13■■□□□ 1.29
CLN3-258ENST00000637184 PSDA5PKW4 1024 aaPredicted RBP23.13■■□□□ 1.29
CLN3-258ENST00000637184 PPEF1O14829 653 aaPredicted RBP23.13■■□□□ 1.29
CLN3-258ENST00000637184 CCDC102BQ68D86 513 aa23.13■■□□□ 1.29
CLN3-258ENST00000637184 ZNF512BQ96KM6 892 aaPredicted RBP23.13■■□□□ 1.29
CLN3-258ENST00000637184 STYK1Q6J9G0 422 aa23.12■■□□□ 1.29
CLN3-258ENST00000637184 XDHP47989 1333 aa23.12■■□□□ 1.29
CLN3-258ENST00000637184 SEC24BO95487 1268 aa23.12■■□□□ 1.29
CLN3-258ENST00000637184 UQCRFS1P1P0C7P4 283 aa23.12■■□□□ 1.29
CLN3-258ENST00000637184 PHKA1P46020 1223 aa23.12■■□□□ 1.29
CLN3-258ENST00000637184 ZNF804BA4D1E1 1349 aa23.11■■□□□ 1.29
CLN3-258ENST00000637184 SP8Q8IXZ3 490 aa23.11■■□□□ 1.29
CLN3-258ENST00000637184 LEMD3Q9Y2U8 911 aa23.11■■□□□ 1.29
CLN3-258ENST00000637184 NDUFB9Q9Y6M9 179 aa23.11■■□□□ 1.29
CLN3-258ENST00000637184 CHMLP26374 656 aa23.1■■□□□ 1.29
CLN3-258ENST00000637184 CHRNA5P30532 468 aa23.1■■□□□ 1.29
CLN3-258ENST00000637184 CACNA1SQ13698 1873 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 WTIPA6NIX2 430 aaPredicted RBP23.09■■□□□ 1.29
CLN3-258ENST00000637184 EIF5BO60841 1220 aaKnown RBP23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms