RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 GOLGA8DPQ0D2H9 430 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 ANKRD20A12PQ8NF67 263 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 RAPGEF4Q8WZA2 1011 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 EAF2Q96CJ1 260 aaPredicted RBP12.76□□□□□ -0.37
CLN3-244ENST00000636147 BICC1Q9H694 974 aaKnown RBP12.76□□□□□ -0.37
CLN3-244ENST00000636147 EPB41L2O43491 1005 aaKnown RBP12.76□□□□□ -0.37
CLN3-244ENST00000636147 FILIP1LQ4L180 1135 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 MAP3K4Q9Y6R4 1608 aa12.76□□□□□ -0.37
CLN3-244ENST00000636147 KLF18A0A0U1RQI7 1052 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 KIF5CO60282 957 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 OAS2P29728 719 aaKnown RBP12.75□□□□□ -0.37
CLN3-244ENST00000636147 LGR6Q9HBX8 967 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 KCNQ3O43525 872 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 HMGB1P09429 215 aaKnown RBP12.75□□□□□ -0.37
CLN3-244ENST00000636147 IBSPP21815 317 aaPredicted RBP12.75□□□□□ -0.37
CLN3-244ENST00000636147 IL17REQ8NFR9 667 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 MRFAP1L1Q96HT8 127 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 PGBD1Q96JS3 809 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 MED14O60244 1454 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 ATP10DQ9P241 1426 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 IFIT1P09914 478 aaKnown RBP12.75□□□□□ -0.37
CLN3-244ENST00000636147 FANCCQ00597 558 aa12.75□□□□□ -0.37
CLN3-244ENST00000636147 A0A087WZG4 1122 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 RHOXF2BP0C7M4 288 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 HNRNPH2P55795 449 aaKnown RBP12.74□□□□□ -0.37
CLN3-244ENST00000636147 MCMDC2Q4G0Z9 681 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 HSP90AB3PQ58FF7 597 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 RHOXF2Q9BQY4 288 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 RAI14Q9P0K7 980 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 POGZQ7Z3K3 1410 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 RXRAP19793 462 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 SLC39A6Q13433 755 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 IMMTQ16891 758 aaKnown RBP12.74□□□□□ -0.37
CLN3-244ENST00000636147 CCDC70Q6NSX1 233 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 GPATCH11Q8N954 259 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 ZCCHC17Q9NP64 241 aaKnown RBP12.74□□□□□ -0.37
CLN3-244ENST00000636147 CDC42BPBQ9Y5S2 1711 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 CLCN6P51797 869 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 TTC39AQ5SRH9 613 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 DHX32Q7L7V1 743 aaKnown RBP12.74□□□□□ -0.37
CLN3-244ENST00000636147 MICU3Q86XE3 530 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 KLHL34Q8N239 644 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 RASSF4Q9H2L5 321 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 DEF6Q9H4E7 631 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 LRRC7Q96NW7 1537 aa12.74□□□□□ -0.37
CLN3-244ENST00000636147 EDC4Q6P2E9 1401 aaKnown RBP12.74□□□□□ -0.37
CLN3-244ENST00000636147 RUFY1Q96T51 708 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 TLR7Q9NYK1 1049 aaKnown RBP12.73□□□□□ -0.37
CLN3-244ENST00000636147 ETF1P62495 437 aaKnown RBP12.73□□□□□ -0.37
CLN3-244ENST00000636147 SETQ01105 290 aaPredicted RBP12.73□□□□□ -0.37
CLN3-244ENST00000636147 KSR2Q6VAB6 950 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 DHX37Q8IY37 1157 aaKnown RBP12.73□□□□□ -0.37
CLN3-244ENST00000636147 KCNG4Q8TDN1 519 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 NUP133Q8WUM0 1156 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 SMARCE1Q969G3 411 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 EPC1Q9H2F5 836 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 ABCA6Q8N139 1617 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 GYS2P54840 703 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 ESCO1Q5FWF5 840 aa12.73□□□□□ -0.37
CLN3-244ENST00000636147 ZNF589Q86UQ0 364 aaPredicted RBP12.73□□□□□ -0.37
CLN3-244ENST00000636147 CTIFO43310 598 aaKnown RBP12.72□□□□□ -0.37
CLN3-244ENST00000636147 PPP2R3AQ06190 1150 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 SMC1AQ14683 1233 aaKnown RBP12.72□□□□□ -0.37
CLN3-244ENST00000636147 DPCR1Q3MIW9 517 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 CCDC102BQ68D86 513 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 MAP4K1Q92918 833 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 ELP1O95163 1332 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 TFCP2Q12800 502 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 ZSCAN26Q16670 478 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 CCDC158Q5M9N0 1113 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 PPP1R13BQ96KQ4 1090 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 CEP126Q9P2H0 1117 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 PNPLA6Q8IY17 1366 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 NAP1L1P55209 391 aaKnown RBP12.72□□□□□ -0.37
CLN3-244ENST00000636147 LRRC59Q96AG4 307 aaKnown RBP12.72□□□□□ -0.37
CLN3-244ENST00000636147 SUCLG2Q96I99 432 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 DBNDD2Q9BQY9 259 aa12.72□□□□□ -0.37
CLN3-244ENST00000636147 SRRTQ9BXP5 876 aaKnown RBP12.72□□□□□ -0.37
CLN3-244ENST00000636147 IQGAP1P46940 1657 aa12.71□□□□□ -0.37
CLN3-244ENST00000636147 ZNF202O95125 648 aa12.71□□□□□ -0.37
CLN3-244ENST00000636147 NECTIN1Q15223 517 aa12.71□□□□□ -0.37
CLN3-244ENST00000636147 SPECC1Q5M775 1068 aa12.71□□□□□ -0.37
CLN3-244ENST00000636147 COPS6Q7L5N1 327 aa12.71□□□□□ -0.37
CLN3-244ENST00000636147 PLA2G4DQ86XP0 818 aa12.71□□□□□ -0.37
CLN3-244ENST00000636147 MORC2Q9Y6X9 1032 aaPredicted RBP12.71□□□□□ -0.37
CLN3-244ENST00000636147 IDH1O75874 414 aaKnown RBP12.71□□□□□ -0.37
CLN3-244ENST00000636147 GTF2A1P52655 376 aaPredicted RBP12.71□□□□□ -0.37
CLN3-244ENST00000636147 STX17P56962 302 aa12.71□□□□□ -0.37
CLN3-244ENST00000636147 DESI2Q9BSY9 194 aa12.71□□□□□ -0.37
CLN3-244ENST00000636147 LINS1Q8NG48 757 aa12.71□□□□□ -0.38
CLN3-244ENST00000636147 GOLGA1Q92805 767 aa12.71□□□□□ -0.38
CLN3-244ENST00000636147 BAG1Q99933 345 aaPredicted RBP12.71□□□□□ -0.38
CLN3-244ENST00000636147 KIAA1468Q9P260 1216 aa12.71□□□□□ -0.38
CLN3-244ENST00000636147 ASXL2Q76L83 1435 aa12.71□□□□□ -0.38
CLN3-244ENST00000636147 ERICH2A1L162 156 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 PNMA6AP0CW24 399 aaPredicted RBP12.7□□□□□ -0.38
CLN3-244ENST00000636147 NDUFA8P51970 172 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 TIMM10P62072 90 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 IRX5P78411 483 aaPredicted RBP12.7□□□□□ -0.38
CLN3-244ENST00000636147 XAGE3Q8WTP9 111 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms