RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 NRBP1Q9UHY1 535 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 JCADQ9P266 1359 aa10.21□□□□□ -0.77
VCL-207ENST00000624354 GOLGA6L19H0YKK7 550 aa10.21□□□□□ -0.77
VCL-207ENST00000624354 IGKV5-2P06315 115 aa10.21□□□□□ -0.77
VCL-207ENST00000624354 RESTQ13127 1097 aa10.21□□□□□ -0.77
VCL-207ENST00000624354 TERF2Q15554 542 aa10.21□□□□□ -0.77
VCL-207ENST00000624354 EDC3Q96F86 508 aaKnown RBP10.21□□□□□ -0.77
VCL-207ENST00000624354 C16orf45Q96MC5 204 aaPredicted RBP10.21□□□□□ -0.77
VCL-207ENST00000624354 CALCOCO1Q9P1Z2 691 aa10.21□□□□□ -0.77
VCL-207ENST00000624354 CLIP2Q9UDT6 1046 aa10.21□□□□□ -0.77
VCL-207ENST00000624354 U3KPZ7 1027 aaPredicted RBP10.21□□□□□ -0.77
VCL-207ENST00000624354 OVOS2A0A0G2JMS6 1433 aa10.21□□□□□ -0.77
VCL-207ENST00000624354 CHD2O14647 1828 aaKnown RBP10.2□□□□□ -0.78
VCL-207ENST00000624354 TNNT1P13805 278 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 ATF3P18847 181 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 ATP5JP18859 108 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 Q6ZUG5 572 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 MORC2Q9Y6X9 1032 aaPredicted RBP10.2□□□□□ -0.78
VCL-207ENST00000624354 NFAT5O94916 1531 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 NEURL1BA8MQ27 555 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 SMTNL1A8MU46 457 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 DDX11Q96FC9 970 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 GOLGB1Q14789 3259 aaKnown RBP10.2□□□□□ -0.78
VCL-207ENST00000624354 CTAGE5O15320 804 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 GCKRQ14397 625 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 PDIA6Q15084 440 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 PAXBP1Q9Y5B6 917 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 PXDNQ92626 1479 aa10.2□□□□□ -0.78
VCL-207ENST00000624354 GCP02774 474 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 MYL6BP14649 208 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 CDC25BP30305 580 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 CHRNA2Q15822 529 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 TPD52L1Q16890 204 aaPredicted RBP10.19□□□□□ -0.78
VCL-207ENST00000624354 KRT222Q8N1A0 295 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 ANKRD24Q8TF21 1146 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 MYD88Q99836 296 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 COPRSQ9NQ92 184 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 DBNLQ9UJU6 430 aaKnown RBP10.19□□□□□ -0.78
VCL-207ENST00000624354 LTN1O94822 1766 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 LMO7Q8WWI1 1683 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 CEBPZQ03701 1054 aaKnown RBP10.19□□□□□ -0.78
VCL-207ENST00000624354 TNNI3KQ59H18 835 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 ARHGEF25Q86VW2 580 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 CACTINQ8WUQ7 758 aaKnown RBP10.19□□□□□ -0.78
VCL-207ENST00000624354 LLPHQ9BRT6 129 aaKnown RBP10.19□□□□□ -0.78
VCL-207ENST00000624354 FPGT-TNNI3KV9GXZ4 949 aa10.19□□□□□ -0.78
VCL-207ENST00000624354 CYP21A2P08686 494 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 MCMDC2Q4G0Z9 681 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 EPHA10Q5JZY3 1008 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 CCDC112Q8NEF3 446 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 METTL22Q9BUU2 404 aaPredicted RBP10.18□□□□□ -0.78
VCL-207ENST00000624354 ERICH4A6NGS2 130 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 BECN2A8MW95 431 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 NEMFO60524 1076 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 HMGB1P09429 215 aaKnown RBP10.18□□□□□ -0.78
VCL-207ENST00000624354 SCRN1Q12765 414 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 STX1AQ16623 288 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 SARM1Q6SZW1 724 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 CCDC73Q6ZRK6 1079 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 COPS6Q7L5N1 327 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 KIF18AQ8NI77 898 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 XAGE3Q8WTP9 111 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 RFX7Q2KHR2 1363 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 TFCP2Q12800 502 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 ZNF790Q6PG37 636 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 CCDC129Q6ZRS4 1044 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 CCAR1Q8IX12 1150 aaKnown RBP10.18□□□□□ -0.78
VCL-207ENST00000624354 SMARCC2Q8TAQ2 1214 aa10.18□□□□□ -0.78
VCL-207ENST00000624354 KAT6BQ8WYB5 2073 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 IRX3P78415 501 aaPredicted RBP10.17□□□□□ -0.78
VCL-207ENST00000624354 IQCB1Q15051 598 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 NAA16Q6N069 864 aaPredicted RBP10.17□□□□□ -0.78
VCL-207ENST00000624354 MRFAP1L1Q96HT8 127 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 SEC62Q99442 399 aaKnown RBP10.17□□□□□ -0.78
VCL-207ENST00000624354 LRRC2Q9BYS8 371 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 TSPYL1Q9H0U9 437 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 RCOR1Q9UKL0 485 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 A0A0G2JS52 829 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 PFKFB2O60825 505 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 KINO60870 393 aaKnown RBP10.17□□□□□ -0.78
VCL-207ENST00000624354 COL15A1P39059 1388 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 PTPN12Q05209 780 aaKnown RBP10.17□□□□□ -0.78
VCL-207ENST00000624354 TMEM94Q12767 1356 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 SLC39A6Q13433 755 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 CCDC144BQ3MJ40 725 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 LRRC8AQ8IWT6 810 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 CCDC144CPQ8IYA2 1237 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 NDUFB9Q9Y6M9 179 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.17□□□□□ -0.78
VCL-207ENST00000624354 ANKRD13DQ6ZTN6 518 aa10.17□□□□□ -0.78
VCL-207ENST00000624354 DHX32Q7L7V1 743 aaKnown RBP10.17□□□□□ -0.78
VCL-207ENST00000624354 ZNF396Q96N95 335 aaPredicted RBP10.17□□□□□ -0.78
VCL-207ENST00000624354 MRC1P22897 1456 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 ZNF609O15014 1411 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 ATL3Q6DD88 541 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 C11orf57Q6ZUT1 292 aaPredicted RBP10.16□□□□□ -0.78
VCL-207ENST00000624354 NSUN7Q8NE18 718 aaKnown RBP10.16□□□□□ -0.78
VCL-207ENST00000624354 HAUS7Q99871 368 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 DBNDD2Q9BQY9 259 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 TRIM34Q9BYJ4 488 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms