RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 MAGEB6Q8N7X4 407 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 CYP46A1Q9Y6A2 500 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 CROCC2H7BZ55 1655 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 KDM5AP29375 1690 aaKnown RBP10.75□□□□□ -0.69
HDAC9-229ENST00000622668 SLC16A10Q8TF71 515 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 TNNQ9UQP3 1299 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 PPP1R12BO60237 982 aaPredicted RBP10.75□□□□□ -0.69
HDAC9-229ENST00000622668 PCCAP05165 728 aaPredicted RBP10.75□□□□□ -0.69
HDAC9-229ENST00000622668 PDE4AP27815 886 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 NFIXQ14938 502 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 RAB3GAP1Q15042 981 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 TRMT1LQ7Z2T5 733 aaKnown RBP10.75□□□□□ -0.69
HDAC9-229ENST00000622668 FNBP4Q8N3X1 1017 aaPredicted RBP10.75□□□□□ -0.69
HDAC9-229ENST00000622668 NOC3LQ8WTT2 800 aaKnown RBP10.75□□□□□ -0.69
HDAC9-229ENST00000622668 CSADQ9Y600 493 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 IQSEC2Q5JU85 1478 aa10.75□□□□□ -0.69
HDAC9-229ENST00000622668 MAST3O60307 1309 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 MAGEB6P1A0A0J9YX57 407 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 TNFAIP1Q13829 316 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 ZYXQ15942 572 aaKnown RBP10.74□□□□□ -0.69
HDAC9-229ENST00000622668 CC2D2BQ6DHV5 1058 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 RTKN2Q8IZC4 609 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 JAKMIP1Q96N16 626 aaKnown RBP10.74□□□□□ -0.69
HDAC9-229ENST00000622668 ANP32EQ9BTT0 268 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 PREX1Q8TCU6 1659 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 IFIT3O14879 490 aaKnown RBP10.74□□□□□ -0.69
HDAC9-229ENST00000622668 TSPY3P0CV98 308 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 TSPY8P0CW00 308 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 GYG1P46976 350 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 SEC31BQ9NQW1 1179 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 LRRC7Q96NW7 1537 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 CLEC4GQ6UXB4 293 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 GREM2Q9H772 168 aa10.74□□□□□ -0.69
HDAC9-229ENST00000622668 SAP30BPQ9UHR5 308 aaKnown RBP10.74□□□□□ -0.69
HDAC9-229ENST00000622668 HLFQ16534 295 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 TBC1D9BQ66K14 1250 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 TTC6Q86TZ1 520 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 TBC1D22AQ8WUA7 517 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 LPIN2Q92539 896 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 C22orf23Q9BZE7 217 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 USP31Q70CQ4 1352 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 NEXMIFQ5QGS0 1516 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 CIAPIN1Q6FI81 312 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 SMCR8Q8TEV9 937 aaPredicted RBP10.73□□□□□ -0.69
HDAC9-229ENST00000622668 EVI5LQ96CN4 794 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 HOOK2Q96ED9 719 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 GBP4Q96PP9 640 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 COL15A1P39059 1388 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 ZC3H13Q5T200 1668 aaKnown RBP10.73□□□□□ -0.69
HDAC9-229ENST00000622668 CYP19A1P11511 503 aaPredicted RBP10.73□□□□□ -0.69
HDAC9-229ENST00000622668 SUSD4Q5VX71 490 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 MFSD6Q6ZSS7 791 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 NLRP10Q86W26 655 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 TEKT1Q969V4 418 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 MTFR1LQ9H019 292 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 ATP6V1DQ9Y5K8 247 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 RICTORQ6R327 1708 aa10.73□□□□□ -0.69
HDAC9-229ENST00000622668 PRPF40BQ6NWY9 871 aaKnown RBP10.72□□□□□ -0.69
HDAC9-229ENST00000622668 HOMER1Q86YM7 354 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 DIP2AQ14689 1571 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 CLRN2A0PK11 232 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 ERVV-1B6SEH8 477 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 TCP10L2B9ZVM9 353 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 PAG1Q9NWQ8 432 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 ZFYP08048 801 aaPredicted RBP10.72□□□□□ -0.69
HDAC9-229ENST00000622668 KRT32Q14532 448 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 CSPP1Q1MSJ5 1256 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 ANKRD44Q8N8A2 993 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 CCDC47Q96A33 483 aaKnown RBP10.72□□□□□ -0.69
HDAC9-229ENST00000622668 XAGE2Q96GT9 111 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 CDK5RAP3Q96JB5 506 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 SCLT1Q96NL6 688 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 DBNDD2Q9BQY9 259 aa10.72□□□□□ -0.69
HDAC9-229ENST00000622668 ZNF277Q9NRM2 450 aaPredicted RBP10.72□□□□□ -0.69
HDAC9-229ENST00000622668 ZNF804BA4D1E1 1349 aa10.71□□□□□ -0.69
HDAC9-229ENST00000622668 XDHP47989 1333 aa10.71□□□□□ -0.69
HDAC9-229ENST00000622668 CHRNDQ07001 517 aa10.71□□□□□ -0.69
HDAC9-229ENST00000622668 KAT14Q9H8E8 782 aa10.71□□□□□ -0.69
HDAC9-229ENST00000622668 LRRIQ1Q96JM4 1722 aa10.71□□□□□ -0.69
HDAC9-229ENST00000622668 TPD52L1Q16890 204 aaPredicted RBP10.71□□□□□ -0.69
HDAC9-229ENST00000622668 WWC2Q6AWC2 1192 aa10.71□□□□□ -0.69
HDAC9-229ENST00000622668 USP48Q86UV5 1035 aa10.71□□□□□ -0.69
HDAC9-229ENST00000622668 TMOD4Q9NZQ9 345 aa10.71□□□□□ -0.69
HDAC9-229ENST00000622668 MROH5Q6ZUA9 1318 aa10.71□□□□□ -0.7
HDAC9-229ENST00000622668 TMC4Q7Z404 712 aa10.71□□□□□ -0.7
HDAC9-229ENST00000622668 CUL5Q93034 780 aa10.71□□□□□ -0.7
HDAC9-229ENST00000622668 BCORL1Q5H9F3 1711 aa10.71□□□□□ -0.7
HDAC9-229ENST00000622668 AATFQ9NY61 560 aaKnown RBP eCLIP10.7□□□□□ -0.7
HDAC9-229ENST00000622668 IVNS1ABPQ9Y6Y0 642 aa10.7□□□□□ -0.7
HDAC9-229ENST00000622668 KRT18P05783 430 aaKnown RBP10.7□□□□□ -0.7
HDAC9-229ENST00000622668 USP40Q9NVE5 1235 aa10.7□□□□□ -0.7
HDAC9-229ENST00000622668 MKRN3Q13064 507 aaKnown RBP10.7□□□□□ -0.7
HDAC9-229ENST00000622668 TBC1D9Q6ZT07 1266 aa10.7□□□□□ -0.7
HDAC9-229ENST00000622668 LINC00116Q8NCU8 138 aa10.7□□□□□ -0.7
HDAC9-229ENST00000622668 GPR101Q96P66 508 aaPredicted RBP10.7□□□□□ -0.7
HDAC9-229ENST00000622668 ZHX3Q9H4I2 956 aa10.7□□□□□ -0.7
HDAC9-229ENST00000622668 CATIPQ7Z7H3 387 aa10.7□□□□□ -0.7
HDAC9-229ENST00000622668 UPF3BQ9BZI7 483 aaKnown RBP10.7□□□□□ -0.7
HDAC9-229ENST00000622668 NRDCO43847 1150 aa10.69□□□□□ -0.7
HDAC9-229ENST00000622668 SSBP05455 408 aaKnown RBP eCLIP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms