RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 TCEANC2Q96MN5 208 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 PLVAPQ9BX97 442 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 IRX5P78411 483 aaPredicted RBP17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 DUSP27Q5VZP5 1158 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 LMNTD2Q8IXW0 634 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 MRRFQ96E11 262 aaKnown RBP17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 TMX3Q96JJ7 454 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 DDX12PQ92771 950 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 WAPLQ7Z5K2 1190 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 MYD88Q99836 296 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 KANK3Q6NY19 840 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 CCDC170Q8IYT3 715 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 TMPOP42166 694 aaKnown RBP17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 KIF5AQ12840 1032 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 GOLIM4O00461 696 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 HDXQ7Z353 690 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 INPP5BP32019 993 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 NEDD9Q14511 834 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 BICD1Q96G01 975 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 TMOD3Q9NYL9 352 aa17.34■□□□□ 0.37
PDLIM2-220ENST00000622226 METAP2P50579 478 aaKnown RBP eCLIP17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 CFAP157Q5JU67 520 aa17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 TRIM7Q9C029 511 aa17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 CIB2O75838 187 aa17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 PPP2R3AQ06190 1150 aa17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 NBPF8Q3BBV2 869 aa17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 AFAP1L1Q8TED9 768 aa17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 ZNF287Q9HBT7 754 aa17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 ANKRD30BQ9BXX2 1392 aa17.33■□□□□ 0.37
PDLIM2-220ENST00000622226 NDUFAB1O14561 156 aa17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 TTF1Q15361 905 aaPredicted RBP17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 UAP1Q16222 522 aaPredicted RBP17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 VTI1AQ96AJ9 217 aa17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 ERCC5P28715 1186 aaPredicted RBP17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 RARSP54136 660 aaKnown RBP17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 STX17P56962 302 aa17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 EVCP57679 992 aa17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 CCDC174Q6PII3 467 aa17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 EPSTI1Q96J88 318 aa17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 DNM1Q05193 864 aaKnown RBP17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 CHRNA2Q15822 529 aa17.33■□□□□ 0.36
PDLIM2-220ENST00000622226 TBC1D32Q96NH3 1257 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 POGZQ7Z3K3 1410 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 TXNDC9O14530 226 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 VAV2P52735 878 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 CTAGE1Q96RT6 745 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 SWAP70Q9UH65 585 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 ZNF853P0CG23 659 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 CACNA2D3Q8IZS8 1091 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 RPGRQ92834 1020 aaKnown RBP17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 UTP14AQ9BVJ6 771 aaKnown RBP17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 MKRN1Q9UHC7 482 aaKnown RBP17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 AKAP2Q9Y2D5 859 aa17.32■□□□□ 0.36
PDLIM2-220ENST00000622226 KRT86O43790 486 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 STAT6P42226 847 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 CAVIN2O95810 425 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 RBM26Q5T8P6 1007 aaKnown RBP17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 ARHGEF2Q92974 986 aaKnown RBP17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 NEK1Q96PY6 1258 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 SNRKQ9NRH2 765 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 ATP2A1O14983 1001 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 PNMA8AQ86V59 439 aaPredicted RBP17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 IFNKQ9P0W0 207 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 CASQ2O14958 399 aaPredicted RBP17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 MAP3K12Q12852 859 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 DPH6Q7L8W6 267 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 RNASE9P60153 205 aaKnown RBP17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 TAF7Q15545 349 aaPredicted RBP17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 ARFGAP2Q8N6H7 521 aa17.31■□□□□ 0.36
PDLIM2-220ENST00000622226 TOP2AP11388 1531 aaKnown RBP17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 PPP1R7Q15435 360 aa17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 TYRO3Q06418 890 aa17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 CAVIN4Q5BKX8 364 aa17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 GKAP1Q5VSY0 366 aaPredicted RBP17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 WHAMMQ8TF30 809 aa17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 TACO1Q9BSH4 297 aaKnown RBP17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 TMOD2Q9NZR1 351 aa17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 WDHD1O75717 1129 aaPredicted RBP17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 HSPA1LP34931 641 aa17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 CCDC42Q96M95 316 aa17.3■□□□□ 0.36
PDLIM2-220ENST00000622226 IGHDP01880 384 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 ZNF131P52739 623 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 VCX3BQ9H321 246 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 TBCAO75347 108 aaKnown RBP17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 RMND1Q9NWS8 449 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 CCDC172P0C7W6 258 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 UBXN1Q04323 297 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 NFE2L2Q16236 605 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 KRT83P78385 493 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 B4GALNT4Q76KP1 1039 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 DHX58Q96C10 678 aa17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 DDX27Q96GQ7 796 aaKnown RBP17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 SUDS3Q9H7L9 328 aaPredicted RBP17.29■□□□□ 0.36
PDLIM2-220ENST00000622226 BRF1Q92994 677 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 GPTP24298 496 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 STXBP4Q6ZWJ1 553 aa17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 C17orf53Q8N3J3 647 aaPredicted RBP17.28■□□□□ 0.36
PDLIM2-220ENST00000622226 CCDC110Q8TBZ0 833 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms