RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 PDE8AO60658 829 aa12.67□□□□□ -0.38
VPS11-208ENST00000621676 DEKP35659 375 aaKnown RBP12.67□□□□□ -0.38
VPS11-208ENST00000621676 IL15P40933 162 aaPredicted RBP12.67□□□□□ -0.38
VPS11-208ENST00000621676 CCT2P78371 535 aaKnown RBP12.67□□□□□ -0.38
VPS11-208ENST00000621676 PIBF1Q8WXW3 757 aa12.67□□□□□ -0.38
VPS11-208ENST00000621676 LTBP4Q8N2S1 1624 aa12.67□□□□□ -0.38
VPS11-208ENST00000621676 LRP6O75581 1613 aa12.67□□□□□ -0.38
VPS11-208ENST00000621676 K7ELQ4 463 aaPredicted RBP12.67□□□□□ -0.38
VPS11-208ENST00000621676 SGSM2O43147 1006 aa12.67□□□□□ -0.38
VPS11-208ENST00000621676 FAM173BQ6P4H8 233 aa12.67□□□□□ -0.38
VPS11-208ENST00000621676 LRP2BPQ9P2M1 347 aa12.67□□□□□ -0.38
VPS11-208ENST00000621676 ST18O60284 1047 aa12.67□□□□□ -0.38
VPS11-208ENST00000621676 SMARCC1Q92922 1105 aaPredicted RBP12.67□□□□□ -0.38
VPS11-208ENST00000621676 THRAP3Q9Y2W1 955 aaKnown RBP12.67□□□□□ -0.38
VPS11-208ENST00000621676 TXNRD3Q86VQ6 643 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 EVI5LQ96CN4 794 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 CDCA7Q9BWT1 371 aaPredicted RBP12.66□□□□□ -0.38
VPS11-208ENST00000621676 RAI14Q9P0K7 980 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 COL18A1P39060 1754 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 COL15A1P39059 1388 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 LARGE1O95461 756 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 GUCY1B3Q02153 619 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 NFIXQ14938 502 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 BARGINQ6ZT62 677 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 ZNF622Q969S3 477 aaKnown RBP eCLIP12.66□□□□□ -0.38
VPS11-208ENST00000621676 PUS7LQ9H0K6 701 aaKnown RBP12.66□□□□□ -0.38
VPS11-208ENST00000621676 PHLPP1O60346 1717 aa12.66□□□□□ -0.38
VPS11-208ENST00000621676 MCAMP43121 646 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 CHRNDQ07001 517 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 MTX1Q13505 466 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 POTEAQ6S8J7 498 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 TMX3Q96JJ7 454 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 NLRP3Q96P20 1036 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 ZKSCAN3Q9BRR0 538 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 BCL2L12Q9HB09 334 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 SALL3Q9BXA9 1300 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 CEBPZQ03701 1054 aaKnown RBP12.65□□□□□ -0.38
VPS11-208ENST00000621676 CCDC102BQ68D86 513 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 MCTP1Q6DN14 999 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 VSIG10Q8N0Z9 540 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 SNX14Q9Y5W7 946 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 PRKAB2O43741 272 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 TXNRD1Q16881 649 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 OSBP2Q969R2 916 aa12.65□□□□□ -0.38
VPS11-208ENST00000621676 VPS37CA5D8V6 355 aaPredicted RBP12.64□□□□□ -0.39
VPS11-208ENST00000621676 MINDY4BA8MYZ0 360 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 STAP2Q9UGK3 403 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 ZNF652Q9Y2D9 606 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 C6orf229H3BNL8 230 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 PRDM1O75626 825 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 AK2P54819 239 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 RABL6Q3YEC7 729 aaPredicted RBP12.64□□□□□ -0.39
VPS11-208ENST00000621676 ANKRD18AQ8IVF6 992 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 PROM2Q8N271 834 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 RXRBP28702 533 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 RBM25P49756 843 aaKnown RBP12.64□□□□□ -0.39
VPS11-208ENST00000621676 CCDC152Q4G0S7 254 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 ZNF34Q8IZ26 560 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 MAGEB6Q8N7X4 407 aa12.64□□□□□ -0.39
VPS11-208ENST00000621676 SCAF8Q9UPN6 1271 aaKnown RBP12.64□□□□□ -0.39
VPS11-208ENST00000621676 ZKSCAN1P17029 563 aaPredicted RBP12.63□□□□□ -0.39
VPS11-208ENST00000621676 TPTE2Q6XPS3 522 aa12.63□□□□□ -0.39
VPS11-208ENST00000621676 RUFY2Q8WXA3 655 aa12.63□□□□□ -0.39
VPS11-208ENST00000621676 OSBPL3Q9H4L5 887 aa12.63□□□□□ -0.39
VPS11-208ENST00000621676 NCOA5Q9HCD5 579 aaKnown RBP12.63□□□□□ -0.39
VPS11-208ENST00000621676 CYP2D7A0A087X1C5 515 aa12.63□□□□□ -0.39
VPS11-208ENST00000621676 M0R2C6 588 aa12.63□□□□□ -0.39
VPS11-208ENST00000621676 PDE8BO95263 885 aa12.63□□□□□ -0.39
VPS11-208ENST00000621676 EVX2Q03828 476 aa12.63□□□□□ -0.39
VPS11-208ENST00000621676 SDR42E1Q8WUS8 393 aa12.63□□□□□ -0.39
VPS11-208ENST00000621676 PIH1D3Q9NQM4 214 aaKnown RBP12.63□□□□□ -0.39
VPS11-208ENST00000621676 FAM208AQ9UK61 1670 aaKnown RBP12.63□□□□□ -0.39
VPS11-208ENST00000621676 EZH2Q15910 746 aaKnown RBP12.62□□□□□ -0.39
VPS11-208ENST00000621676 CREB3L3Q68CJ9 461 aa12.62□□□□□ -0.39
VPS11-208ENST00000621676 CNBD1Q8NA66 436 aa12.62□□□□□ -0.39
VPS11-208ENST00000621676 LSG1Q9H089 658 aaKnown RBP12.62□□□□□ -0.39
VPS11-208ENST00000621676 ARMT1Q9H993 441 aa12.62□□□□□ -0.39
VPS11-208ENST00000621676 TNPO1Q92973 898 aaKnown RBP12.62□□□□□ -0.39
VPS11-208ENST00000621676 RIPOR2Q9Y4F9 1068 aa12.62□□□□□ -0.39
VPS11-208ENST00000621676 CENPFP49454 3210 aa12.62□□□□□ -0.39
VPS11-208ENST00000621676 CYP2E1P05181 493 aaPredicted RBP12.62□□□□□ -0.39
VPS11-208ENST00000621676 MYL10Q9BUA6 226 aa12.62□□□□□ -0.39
VPS11-208ENST00000621676 PDRG1Q9NUG6 133 aa12.62□□□□□ -0.39
VPS11-208ENST00000621676 NTSR2O95665 410 aa12.61□□□□□ -0.39
VPS11-208ENST00000621676 RASGRF1Q13972 1273 aa12.61□□□□□ -0.39
VPS11-208ENST00000621676 RABEP1Q15276 862 aa12.61□□□□□ -0.39
VPS11-208ENST00000621676 MXD3Q9BW11 206 aa12.61□□□□□ -0.39
VPS11-208ENST00000621676 TNS2Q63HR2 1409 aa12.61□□□□□ -0.39
VPS11-208ENST00000621676 CMTR1Q8N1G2 835 aaKnown RBP12.61□□□□□ -0.39
VPS11-208ENST00000621676 BRF1Q92994 677 aa12.61□□□□□ -0.39
VPS11-208ENST00000621676 RAD21O60216 631 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 ZNF827Q17R98 1081 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 UTYO14607 1347 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 CCDC171Q6TFL3 1326 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 RPS6KA4O75676 772 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 SLURP2P0DP57 97 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 RPS8P62241 208 aaKnown RBP12.6□□□□□ -0.39
VPS11-208ENST00000621676 GJB4Q9NTQ9 266 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 ABCC12Q96J65 1359 aa12.6□□□□□ -0.39
VPS11-208ENST00000621676 C5P01031 1676 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms