RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TNNT3P45378 269 aaPredicted RBP12.68□□□□□ -0.38
UPF3A-212ENST00000619079 SULT6B1Q6IMI4 303 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 CTR9Q6PD62 1173 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 ST7Q9NRC1 585 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 NRDCO43847 1150 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 KCNJ6P48051 423 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 CCZ1BP86790 482 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 CCZ1P86791 482 aaPredicted RBP12.68□□□□□ -0.38
UPF3A-212ENST00000619079 SNW1Q13573 536 aaKnown RBP12.68□□□□□ -0.38
UPF3A-212ENST00000619079 TMCO3Q6UWJ1 677 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 RAPGEF4Q8WZA2 1011 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 RASSF4Q9H2L5 321 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 CWC15Q9P013 229 aaKnown RBP12.68□□□□□ -0.38
UPF3A-212ENST00000619079 PNMA6EA0A0J9YXQ4 647 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 TPM1P09493 284 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 CLCN6P51797 869 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 STX1AQ16623 288 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 BICD2Q8TD16 824 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 LEO1Q8WVC0 666 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-212ENST00000619079 JAKMIP1Q96N16 626 aaKnown RBP12.67□□□□□ -0.38
UPF3A-212ENST00000619079 IMPACTQ9P2X3 320 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 THRAP3Q9Y2W1 955 aaKnown RBP12.67□□□□□ -0.38
UPF3A-212ENST00000619079 ZKSCAN1P17029 563 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-212ENST00000619079 IQCB1Q15051 598 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 KCNB2Q92953 911 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 GTF3C6Q969F1 213 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 STK31Q9BXU1 1019 aa12.67□□□□□ -0.38
UPF3A-212ENST00000619079 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.66□□□□□ -0.38
UPF3A-212ENST00000619079 PSDA5PKW4 1024 aaPredicted RBP12.66□□□□□ -0.38
UPF3A-212ENST00000619079 BECN2A8MW95 431 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 F6X3S4 739 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 GIGYF1O75420 1035 aaPredicted RBP12.66□□□□□ -0.38
UPF3A-212ENST00000619079 IL2RBP14784 551 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 ANKRD1Q15327 319 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 LARP6Q9BRS8 491 aaKnown RBP12.66□□□□□ -0.38
UPF3A-212ENST00000619079 SRRTQ9BXP5 876 aaKnown RBP12.66□□□□□ -0.38
UPF3A-212ENST00000619079 IGSF1Q8N6C5 1336 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 CCP110O43303 1012 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 ZRANB2O95218 330 aaKnown RBP eCLIP12.66□□□□□ -0.38
UPF3A-212ENST00000619079 ERCC6LQ2NKX8 1250 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 CCDC93Q567U6 631 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 CDC37L1Q7L3B6 337 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 PI4K2BQ8TCG2 481 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 YY1AP1Q9H869 796 aa12.66□□□□□ -0.38
UPF3A-212ENST00000619079 TATP17735 454 aaPredicted RBP12.65□□□□□ -0.38
UPF3A-212ENST00000619079 PLA2G4AP47712 749 aa12.65□□□□□ -0.38
UPF3A-212ENST00000619079 ME3Q16798 604 aa12.65□□□□□ -0.38
UPF3A-212ENST00000619079 CCDC150Q8NCX0 1101 aa12.65□□□□□ -0.38
UPF3A-212ENST00000619079 TRMT1Q9NXH9 659 aaKnown RBP12.65□□□□□ -0.38
UPF3A-212ENST00000619079 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.65□□□□□ -0.38
UPF3A-212ENST00000619079 NR1I2O75469 434 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 ARHGAP29Q52LW3 1261 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 OSBPL5Q9H0X9 879 aaPredicted RBP12.64□□□□□ -0.39
UPF3A-212ENST00000619079 PXDNLA1KZ92 1463 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 PSMA5P28066 241 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 BARGINQ6ZT62 677 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 FERMT3Q86UX7 667 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 SSH3Q8TE77 659 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 UBXN4Q92575 508 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 NAT10Q9H0A0 1025 aaKnown RBP12.64□□□□□ -0.39
UPF3A-212ENST00000619079 MAP3K5Q99683 1374 aa12.64□□□□□ -0.39
UPF3A-212ENST00000619079 ST3GAL1Q11201 340 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 CWC27Q6UX04 472 aaKnown RBP12.63□□□□□ -0.39
UPF3A-212ENST00000619079 G2E3Q7L622 706 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 SEPT12Q8IYM1 358 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 CDCA7Q9BWT1 371 aaPredicted RBP12.63□□□□□ -0.39
UPF3A-212ENST00000619079 CFAP45Q9UL16 551 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 FAM208AQ9UK61 1670 aaKnown RBP12.63□□□□□ -0.39
UPF3A-212ENST00000619079 ARID5BQ14865 1188 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 DDB1Q16531 1140 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 MCM10Q7L590 875 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 NUTM1Q86Y26 1132 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 AK7Q96M32 723 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 IL1RAPL2Q9NP60 686 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 ANO10Q9NW15 660 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 USP16Q9Y5T5 823 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 LRRFIP2Q9Y608 721 aaKnown RBP12.63□□□□□ -0.39
UPF3A-212ENST00000619079 TTC41PQ6P2S7 1318 aa12.63□□□□□ -0.39
UPF3A-212ENST00000619079 GLI3P10071 1580 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 EXOC5O00471 708 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 NPHP1O15259 732 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 CPA1P15085 419 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 MAPK8IP2Q13387 824 aaPredicted RBP12.62□□□□□ -0.39
UPF3A-212ENST00000619079 HSP90AB4PQ58FF6 505 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 CEP57L1Q8IYX8 460 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 TRERF1Q96PN7 1200 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 SPG7Q9UQ90 795 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 PHLPP2Q6ZVD8 1323 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 USP42Q9H9J4 1324 aaKnown RBP12.62□□□□□ -0.39
UPF3A-212ENST00000619079 GLRX3O76003 335 aaKnown RBP12.62□□□□□ -0.39
UPF3A-212ENST00000619079 UBTFL1P0CB47 393 aaPredicted RBP12.62□□□□□ -0.39
UPF3A-212ENST00000619079 PRPF40BQ6NWY9 871 aaKnown RBP12.62□□□□□ -0.39
UPF3A-212ENST00000619079 KRBA2Q6ZNG9 492 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 RHPN1Q8TCX5 695 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 PPP1R13BQ96KQ4 1090 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 UBXN6Q9BZV1 441 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 ORC3Q9UBD5 711 aaPredicted RBP12.62□□□□□ -0.39
UPF3A-212ENST00000619079 RSPH14Q9UHP6 348 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 RGPD2P0DJD1 1756 aa12.62□□□□□ -0.39
UPF3A-212ENST00000619079 FLIIQ13045 1269 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms