RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 RNF114Q9Y508 228 aa7.93□□□□□ -1.14
SMCHD1-213ENST00000609587 FAM69CQ0P6D2 419 aa7.92□□□□□ -1.14
SMCHD1-213ENST00000609587 MRPL18Q9H0U6 180 aaKnown RBP7.92□□□□□ -1.14
SMCHD1-213ENST00000609587 SMG9Q9H0W8 520 aaKnown RBP7.92□□□□□ -1.14
SMCHD1-213ENST00000609587 RTN1Q16799 776 aa7.91□□□□□ -1.14
SMCHD1-213ENST00000609587 TMEM130Q8N3G9 435 aa7.91□□□□□ -1.14
SMCHD1-213ENST00000609587 INPP5BP32019 993 aa7.9□□□□□ -1.14
SMCHD1-213ENST00000609587 STK32AQ8WU08 396 aa7.9□□□□□ -1.14
SMCHD1-213ENST00000609587 FOXO3O43524 673 aa7.89□□□□□ -1.15
SMCHD1-213ENST00000609587 IGLV1-40P01703 118 aa7.89□□□□□ -1.15
SMCHD1-213ENST00000609587 EIF2AK2P19525 551 aaKnown RBP7.89□□□□□ -1.15
SMCHD1-213ENST00000609587 SPINK2P20155 84 aa7.89□□□□□ -1.15
SMCHD1-213ENST00000609587 AGGF1Q8N302 714 aaeCLIP7.89□□□□□ -1.15
SMCHD1-213ENST00000609587 IFT43Q96FT9 208 aa7.89□□□□□ -1.15
SMCHD1-213ENST00000609587 RAXQ9Y2V3 346 aa7.89□□□□□ -1.15
SMCHD1-213ENST00000609587 CARNS1A5YM72 827 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 TMEM88BA6NKF7 163 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 PTCD1O75127 700 aaKnown RBP7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 LGR5O75473 907 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 RARAP10276 462 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 GLB1P16278 677 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 EPB42P16452 691 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 TARSP26639 723 aaKnown RBP7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 IDH3AP50213 366 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 FZD5Q13467 585 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 TMEM164Q5U3C3 297 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 HFE2Q6ZVN8 426 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 ZDHHC13Q8IUH4 622 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 CHMP7Q8WUX9 453 aaPredicted RBP7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 KRTAP4-9Q9BYQ8 210 aa7.88□□□□□ -1.15
SMCHD1-213ENST00000609587 GSC2O15499 205 aa7.87□□□□□ -1.15
SMCHD1-213ENST00000609587 SASH3O75995 380 aa7.86□□□□□ -1.15
SMCHD1-213ENST00000609587 NRLP54845 237 aa7.86□□□□□ -1.15
SMCHD1-213ENST00000609587 SETDB1Q15047 1291 aa7.86□□□□□ -1.15
SMCHD1-213ENST00000609587 OCLNQ16625 522 aa7.86□□□□□ -1.15
SMCHD1-213ENST00000609587 CLP1Q92989 425 aaKnown RBP7.86□□□□□ -1.15
SMCHD1-213ENST00000609587 KLK14Q9P0G3 267 aa7.86□□□□□ -1.15
SMCHD1-213ENST00000609587 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.85□□□□□ -1.15
SMCHD1-213ENST00000609587 PLD4Q96BZ4 506 aa7.85□□□□□ -1.15
SMCHD1-213ENST00000609587 UBL7Q96S82 380 aaPredicted RBP7.85□□□□□ -1.15
SMCHD1-213ENST00000609587 ARSDP51689 593 aa7.84□□□□□ -1.15
SMCHD1-213ENST00000609587 ARMC10Q8N2F6 343 aa7.84□□□□□ -1.15
SMCHD1-213ENST00000609587 PRIMPOLQ96LW4 560 aa7.84□□□□□ -1.15
SMCHD1-213ENST00000609587 SRA1Q9HD15 236 aaKnown RBP7.84□□□□□ -1.15
SMCHD1-213ENST00000609587 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.84□□□□□ -1.15
SMCHD1-213ENST00000609587 STOML1Q9UBI4 398 aa7.84□□□□□ -1.15
SMCHD1-213ENST00000609587 PRMT3O60678 531 aa7.83□□□□□ -1.16
SMCHD1-213ENST00000609587 GDF6Q6KF10 455 aaPredicted RBP7.83□□□□□ -1.16
SMCHD1-213ENST00000609587 AEBP1Q8IUX7 1158 aa7.83□□□□□ -1.16
SMCHD1-213ENST00000609587 COL26A1Q96A83 441 aa7.83□□□□□ -1.16
SMCHD1-213ENST00000609587 WISP1O95388 367 aa7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 FKBP5Q13451 457 aaPredicted RBP7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 DTX1Q86Y01 620 aa7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 IL22RA1Q8N6P7 574 aa7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 VTI1AQ96AJ9 217 aa7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 MYO19Q96H55 970 aa7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 QTRT2Q9H974 415 aaKnown RBP7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 TLR7Q9NYK1 1049 aaKnown RBP7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 CXXC1Q9P0U4 656 aaPredicted RBP7.82□□□□□ -1.16
SMCHD1-213ENST00000609587 J3QW42 95 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 BRD1O95696 1058 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 JAG1P78504 1218 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 NFIAQ12857 509 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 TRIM26Q12899 539 aaPredicted RBP7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 B4GALNT3Q6L9W6 998 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 MAP4K3Q8IVH8 894 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 C7orf69Q9H7B7 122 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 C11orf16Q9NQ32 467 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 SLAIN2Q9P270 581 aa7.81□□□□□ -1.16
SMCHD1-213ENST00000609587 ZBTB7CA1YPR0 619 aa7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 PRR19A6NJB7 356 aa7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 DHX15O43143 795 aaKnown RBP7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 ARID4AP29374 1257 aaPredicted RBP7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 DGKZQ13574 1117 aa7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 NSUN5Q96P11 429 aaKnown RBP7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 ADGRE2Q9UHX3 823 aa7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 TRIM33Q9UPN9 1127 aa7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 USP20Q9Y2K6 914 aa7.8□□□□□ -1.16
SMCHD1-213ENST00000609587 GRIK1P39086 918 aa7.79□□□□□ -1.16
SMCHD1-213ENST00000609587 INTS5Q6P9B9 1019 aaKnown RBP7.79□□□□□ -1.16
SMCHD1-213ENST00000609587 GALNT11Q8NCW6 608 aa7.79□□□□□ -1.16
SMCHD1-213ENST00000609587 DCAF11Q8TEB1 546 aa7.79□□□□□ -1.16
SMCHD1-213ENST00000609587 MICAL2O94851 1124 aa7.78□□□□□ -1.16
SMCHD1-213ENST00000609587 HOXD8P13378 290 aaPredicted RBP7.78□□□□□ -1.16
SMCHD1-213ENST00000609587 C11orf91Q3C1V1 193 aa7.78□□□□□ -1.16
SMCHD1-213ENST00000609587 TRIM42Q8IWZ5 723 aa7.78□□□□□ -1.16
SMCHD1-213ENST00000609587 DBNDD2Q9BQY9 259 aa7.78□□□□□ -1.16
SMCHD1-213ENST00000609587 LRFN2Q9ULH4 789 aa7.78□□□□□ -1.16
SMCHD1-213ENST00000609587 LOC102724428A0A0B4J2F2 783 aa7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 PATL2C9JE40 543 aaKnown RBP7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 EGFRP00533 1210 aa7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 ATP2B4P23634 1241 aa7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 SIK1P57059 783 aa7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 KCNA1Q09470 495 aa7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 UVSSAQ2YD98 709 aa7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 RNF43Q68DV7 783 aa7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 UTP4Q969X6 686 aaKnown RBP7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 RTCBQ9Y3I0 505 aaKnown RBP7.77□□□□□ -1.17
SMCHD1-213ENST00000609587 HMX2A2RU54 273 aa7.76□□□□□ -1.17
SMCHD1-213ENST00000609587 TM4SF5O14894 197 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms