RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 RIPOR2Q9Y4F9 1068 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 FPGT-TNNI3KV9GXZ4 949 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 DDX60Q8IY21 1712 aaKnown RBP14.23□□□□□ -0.13
VRK3-223ENST00000601341 MYH3P11055 1940 aa14.23□□□□□ -0.13
VRK3-223ENST00000601341 CCDC24Q8N4L8 307 aa14.22□□□□□ -0.13
VRK3-223ENST00000601341 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.22□□□□□ -0.13
VRK3-223ENST00000601341 LAMB2P55268 1798 aa14.22□□□□□ -0.13
VRK3-223ENST00000601341 TTC41PQ6P2S7 1318 aa14.22□□□□□ -0.13
VRK3-223ENST00000601341 RIC1Q4ADV7 1423 aa14.22□□□□□ -0.13
VRK3-223ENST00000601341 DDIT3P35638 169 aa14.22□□□□□ -0.13
VRK3-223ENST00000601341 TBC1D9Q6ZT07 1266 aa14.22□□□□□ -0.13
VRK3-223ENST00000601341 CCDC8Q9H0W5 538 aaPredicted RBP14.22□□□□□ -0.13
VRK3-223ENST00000601341 AKAP2Q9Y2D5 859 aa14.22□□□□□ -0.13
VRK3-223ENST00000601341 PARP3Q9Y6F1 533 aa14.22□□□□□ -0.13
VRK3-223ENST00000601341 ERC2O15083 957 aa14.21□□□□□ -0.13
VRK3-223ENST00000601341 MMP10P09238 476 aa14.21□□□□□ -0.13
VRK3-223ENST00000601341 GSPT1P15170 499 aaKnown RBP14.21□□□□□ -0.13
VRK3-223ENST00000601341 METTL24Q5JXM2 366 aa14.21□□□□□ -0.13
VRK3-223ENST00000601341 ANKRD18AQ8IVF6 992 aa14.21□□□□□ -0.13
VRK3-223ENST00000601341 ECHDC1Q9NTX5 307 aa14.21□□□□□ -0.13
VRK3-223ENST00000601341 TUBGCP6Q96RT7 1819 aa14.21□□□□□ -0.14
VRK3-223ENST00000601341 MROH5Q6ZUA9 1318 aa14.2□□□□□ -0.14
VRK3-223ENST00000601341 GLRX3O76003 335 aaKnown RBP14.2□□□□□ -0.14
VRK3-223ENST00000601341 TSHZ3Q63HK5 1081 aa14.2□□□□□ -0.14
VRK3-223ENST00000601341 DDX46Q7L014 1031 aaKnown RBP14.2□□□□□ -0.14
VRK3-223ENST00000601341 MSL1Q68DK7 614 aa14.19□□□□□ -0.14
VRK3-223ENST00000601341 UPF1Q92900 1129 aaKnown RBP eCLIP14.19□□□□□ -0.14
VRK3-223ENST00000601341 PTMSP20962 102 aa14.19□□□□□ -0.14
VRK3-223ENST00000601341 PI4K2BQ8TCG2 481 aa14.19□□□□□ -0.14
VRK3-223ENST00000601341 SLC16A10Q8TF71 515 aa14.19□□□□□ -0.14
VRK3-223ENST00000601341 NEUROD6Q96NK8 337 aa14.19□□□□□ -0.14
VRK3-223ENST00000601341 KIF2CQ99661 725 aa14.19□□□□□ -0.14
VRK3-223ENST00000601341 BSDC1Q9NW68 430 aaPredicted RBP14.19□□□□□ -0.14
VRK3-223ENST00000601341 TLR7Q9NYK1 1049 aaKnown RBP14.19□□□□□ -0.14
VRK3-223ENST00000601341 DBNLQ9UJU6 430 aaKnown RBP14.19□□□□□ -0.14
VRK3-223ENST00000601341 A0A1B0GUL7 405 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 DDX11L8A8MPP1 907 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 PDE8BO95263 885 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 MCM4P33991 863 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 RPS8P62241 208 aaKnown RBP14.18□□□□□ -0.14
VRK3-223ENST00000601341 CRY2Q49AN0 593 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 CASC1Q6TDU7 716 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 VGLL2Q8N8G2 317 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 IL27Q8NEV9 243 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 BRIP1Q9BX63 1249 aa14.18□□□□□ -0.14
VRK3-223ENST00000601341 KLRG2A4D1S0 409 aaPredicted RBP14.17□□□□□ -0.14
VRK3-223ENST00000601341 SDSP20132 328 aa14.17□□□□□ -0.14
VRK3-223ENST00000601341 TIMM10P62072 90 aa14.17□□□□□ -0.14
VRK3-223ENST00000601341 RPGRQ92834 1020 aaKnown RBP14.17□□□□□ -0.14
VRK3-223ENST00000601341 CELF1Q92879 486 aaKnown RBP14.17□□□□□ -0.14
VRK3-223ENST00000601341 DBNDD2Q9BQY9 259 aa14.17□□□□□ -0.14
VRK3-223ENST00000601341 QSER1Q2KHR3 1735 aa14.17□□□□□ -0.14
VRK3-223ENST00000601341 LRP5O75197 1615 aa14.17□□□□□ -0.14
VRK3-223ENST00000601341 ZNF609O15014 1411 aa14.17□□□□□ -0.14
VRK3-223ENST00000601341 ATP2B3Q16720 1220 aa14.17□□□□□ -0.14
VRK3-223ENST00000601341 TRIM6-TRIM34B2RNG4 842 aa14.16□□□□□ -0.14
VRK3-223ENST00000601341 ATP5JP18859 108 aa14.16□□□□□ -0.14
VRK3-223ENST00000601341 GRAPQ13588 217 aa14.16□□□□□ -0.14
VRK3-223ENST00000601341 PUM3Q15397 648 aaKnown RBP14.16□□□□□ -0.14
VRK3-223ENST00000601341 L1TD1Q5T7N2 865 aaKnown RBP14.16□□□□□ -0.14
VRK3-223ENST00000601341 GRAPLQ8TC17 118 aaPredicted RBP14.16□□□□□ -0.14
VRK3-223ENST00000601341 RBM17Q96I25 401 aaKnown RBP14.16□□□□□ -0.14
VRK3-223ENST00000601341 ISY1Q9ULR0 285 aaKnown RBP14.16□□□□□ -0.14
VRK3-223ENST00000601341 HOXA10P31260 410 aaPredicted RBP14.15□□□□□ -0.14
VRK3-223ENST00000601341 PDE6BP35913 854 aa14.15□□□□□ -0.14
VRK3-223ENST00000601341 CHRNDQ07001 517 aa14.15□□□□□ -0.14
VRK3-223ENST00000601341 RABEP1Q15276 862 aa14.15□□□□□ -0.14
VRK3-223ENST00000601341 GORABQ5T7V8 394 aa14.15□□□□□ -0.14
VRK3-223ENST00000601341 HELBQ8NG08 1087 aaPredicted RBP14.15□□□□□ -0.14
VRK3-223ENST00000601341 LPIN2Q92539 896 aa14.15□□□□□ -0.14
VRK3-223ENST00000601341 K7ELQ4 463 aaPredicted RBP14.14□□□□□ -0.15
VRK3-223ENST00000601341 CCDC158Q5M9N0 1113 aa14.14□□□□□ -0.15
VRK3-223ENST00000601341 RILPL2Q969X0 211 aa14.14□□□□□ -0.15
VRK3-223ENST00000601341 XAGE2Q96GT9 111 aa14.14□□□□□ -0.15
VRK3-223ENST00000601341 PDGFDQ9GZP0 370 aaPredicted RBP14.14□□□□□ -0.15
VRK3-223ENST00000601341 MINPP1Q9UNW1 487 aa14.14□□□□□ -0.15
VRK3-223ENST00000601341 FGFR2P21802 821 aa14.14□□□□□ -0.15
VRK3-223ENST00000601341 CNTROBQ8N137 903 aa14.14□□□□□ -0.15
VRK3-223ENST00000601341 CRAMP1Q96RY5 1269 aa14.14□□□□□ -0.15
VRK3-223ENST00000601341 ANKRD2Q9GZV1 360 aa14.14□□□□□ -0.15
VRK3-223ENST00000601341 TNRC6CQ9HCJ0 1690 aaKnown RBP14.13□□□□□ -0.15
VRK3-223ENST00000601341 TAF5LO75529 589 aa14.13□□□□□ -0.15
VRK3-223ENST00000601341 BBOX1O75936 387 aa14.13□□□□□ -0.15
VRK3-223ENST00000601341 REC8O95072 547 aa14.13□□□□□ -0.15
VRK3-223ENST00000601341 SLC5A1P13866 664 aa14.13□□□□□ -0.15
VRK3-223ENST00000601341 CLEC17AQ6ZS10 378 aa14.13□□□□□ -0.15
VRK3-223ENST00000601341 BOLA2Q9H3K6 86 aa14.13□□□□□ -0.15
VRK3-223ENST00000601341 NRXN2Q9P2S2 1712 aa14.13□□□□□ -0.15
VRK3-223ENST00000601341 IFIT1P09914 478 aaKnown RBP14.12□□□□□ -0.15
VRK3-223ENST00000601341 EVI5LQ96CN4 794 aa14.12□□□□□ -0.15
VRK3-223ENST00000601341 GBP4Q96PP9 640 aa14.12□□□□□ -0.15
VRK3-223ENST00000601341 EPB41L2O43491 1005 aaKnown RBP14.11□□□□□ -0.15
VRK3-223ENST00000601341 MAP4K4O95819 1239 aaPredicted RBP14.11□□□□□ -0.15
VRK3-223ENST00000601341 SRGNP10124 158 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 NPR1P16066 1061 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 ADORA1P30542 326 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 UBE4AQ14139 1066 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 RAB3GAP1Q15042 981 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 TTC39AQ5SRH9 613 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms