RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CCDC183Q5T5S1 534 aa23.39■■□□□ 1.34
UPF1-207ENST00000599848 RBM26Q5T8P6 1007 aaKnown RBP23.39■■□□□ 1.34
UPF1-207ENST00000599848 MICU3Q86XE3 530 aa23.39■■□□□ 1.34
UPF1-207ENST00000599848 SNRKQ9NRH2 765 aa23.39■■□□□ 1.34
UPF1-207ENST00000599848 DENND2AQ9ULE3 1009 aa23.39■■□□□ 1.34
UPF1-207ENST00000599848 RALGAPBQ86X10 1494 aa23.39■■□□□ 1.33
UPF1-207ENST00000599848 H0YIN7 160 aa23.39■■□□□ 1.33
UPF1-207ENST00000599848 ZNF354CQ86Y25 554 aa23.39■■□□□ 1.33
UPF1-207ENST00000599848 PPIP5K1Q6PFW1 1433 aa23.39■■□□□ 1.33
UPF1-207ENST00000599848 URB2Q14146 1524 aaKnown RBP23.38■■□□□ 1.33
UPF1-207ENST00000599848 NAPAP54920 295 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 FAM177A1Q8N128 213 aaPredicted RBP23.38■■□□□ 1.33
UPF1-207ENST00000599848 ARHGEF10LQ9HCE6 1279 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 COPS6Q7L5N1 327 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 KIAA1524Q8TCG1 905 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 CEP83Q9Y592 693 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 STK24Q9Y6E0 443 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 IKBKGQ9Y6K9 419 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 UBXN4Q92575 508 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 TBX22Q9Y458 520 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 GRM8O00222 908 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 GNPATO15228 680 aa23.38■■□□□ 1.33
UPF1-207ENST00000599848 POTEB2H3BUK9 544 aa23.37■■□□□ 1.33
UPF1-207ENST00000599848 KIF22Q14807 665 aa23.37■■□□□ 1.33
UPF1-207ENST00000599848 RGS22Q8NE09 1264 aa23.37■■□□□ 1.33
UPF1-207ENST00000599848 GSDMDP57764 484 aa23.37■■□□□ 1.33
UPF1-207ENST00000599848 SLU7O95391 586 aaKnown RBP23.36■■□□□ 1.33
UPF1-207ENST00000599848 FERMT3Q86UX7 667 aa23.36■■□□□ 1.33
UPF1-207ENST00000599848 HS2ST1Q7LGA3 356 aa23.36■■□□□ 1.33
UPF1-207ENST00000599848 LINS1Q8NG48 757 aa23.36■■□□□ 1.33
UPF1-207ENST00000599848 GJA3Q9Y6H8 435 aa23.36■■□□□ 1.33
UPF1-207ENST00000599848 PTPN23Q9H3S7 1636 aa23.36■■□□□ 1.33
UPF1-207ENST00000599848 FSIP1Q8NA03 581 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 ARHGEF10O15013 1369 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 IRS4O14654 1257 aaPredicted RBP23.35■■□□□ 1.33
UPF1-207ENST00000599848 SLC8A3P57103 927 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 PDCL2Q8N4E4 241 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 MAP3K1Q13233 1512 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 KRT79Q5XKE5 535 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 SPAG5Q96R06 1193 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 DUOX2Q9NRD8 1548 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 BMS1Q14692 1282 aaKnown RBP23.35■■□□□ 1.33
UPF1-207ENST00000599848 CTAGE1Q96RT6 745 aa23.35■■□□□ 1.33
UPF1-207ENST00000599848 KIF4BQ2VIQ3 1234 aa23.34■■□□□ 1.33
UPF1-207ENST00000599848 ABCC10Q5T3U5 1492 aa23.34■■□□□ 1.33
UPF1-207ENST00000599848 HEATR3Q7Z4Q2 680 aa23.34■■□□□ 1.33
UPF1-207ENST00000599848 TMCO5BA8MYB1 307 aa23.34■■□□□ 1.33
UPF1-207ENST00000599848 SPC25Q9HBM1 224 aa23.34■■□□□ 1.33
UPF1-207ENST00000599848 SNX16P57768 344 aa23.33■■□□□ 1.33
UPF1-207ENST00000599848 SMARCA5O60264 1052 aaPredicted RBP23.33■■□□□ 1.33
UPF1-207ENST00000599848 DPY19L2Q6NUT2 758 aa23.33■■□□□ 1.33
UPF1-207ENST00000599848 LMBR1LQ6UX01 489 aa23.33■■□□□ 1.33
UPF1-207ENST00000599848 TRIM47Q96LD4 638 aa23.33■■□□□ 1.32
UPF1-207ENST00000599848 RHPN1Q8TCX5 695 aa23.32■■□□□ 1.32
UPF1-207ENST00000599848 STX1AQ16623 288 aa23.32■■□□□ 1.32
UPF1-207ENST00000599848 FAM13AO94988 1023 aa23.32■■□□□ 1.32
UPF1-207ENST00000599848 STAT6P42226 847 aa23.32■■□□□ 1.32
UPF1-207ENST00000599848 MCMDC2Q4G0Z9 681 aa23.32■■□□□ 1.32
UPF1-207ENST00000599848 ALDH1B1P30837 517 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 CCT2P78371 535 aaKnown RBP23.31■■□□□ 1.32
UPF1-207ENST00000599848 BACH1O14867 736 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 EIF4G3O43432 1585 aaKnown RBP23.31■■□□□ 1.32
UPF1-207ENST00000599848 CCDC102AQ96A19 550 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 KCNG1Q9UIX4 513 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 GGA1Q9UJY5 639 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 CASQ1P31415 396 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 SLC9C2Q5TAH2 1124 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 TAF3Q5VWG9 929 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 MBIPQ9NS73 344 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 RBM28Q9NW13 759 aaKnown RBP23.31■■□□□ 1.32
UPF1-207ENST00000599848 CLIP2Q9UDT6 1046 aa23.31■■□□□ 1.32
UPF1-207ENST00000599848 HACE1Q8IYU2 909 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 LARGE2Q8N3Y3 721 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 CCDC113Q9H0I3 377 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 BTG4Q9NY30 223 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 CCDC171Q6TFL3 1326 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 TRMT1LQ7Z2T5 733 aaKnown RBP23.3■■□□□ 1.32
UPF1-207ENST00000599848 NIM1KQ8IY84 436 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 HAUS2Q9NVX0 235 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 MCM9Q9NXL9 1143 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 PNMA2Q9UL42 364 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 KLF18A0A0U1RQI7 1052 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 PSMA7O14818 248 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 FAM193AP78312 1265 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 CCDC14Q49A88 953 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 CHPF2Q9P2E5 772 aa23.3■■□□□ 1.32
UPF1-207ENST00000599848 TNFAIP1Q13829 316 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 KCNG4Q8TDN1 519 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 KCNA6P17658 529 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 LMBR1Q8WVP7 490 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 GOPCQ9HD26 462 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 BABAM1Q9NWV8 329 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 NUP160Q12769 1436 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 ATP2A1O14983 1001 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 GUCY1B3Q02153 619 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 KIAA0753Q2KHM9 967 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 M0QZ92 97 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 GCP02774 474 aa23.29■■□□□ 1.32
UPF1-207ENST00000599848 PPP1R2P41236 205 aa23.28■■□□□ 1.32
UPF1-207ENST00000599848 PABPC4Q13310 644 aaKnown RBP eCLIP23.28■■□□□ 1.324e-12■■■□□ 18.7
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms