RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CYP46A1Q9Y6A2 500 aa17.36■□□□□ 0.37
VRK3-217ENST00000599538 MYH3P11055 1940 aa17.36■□□□□ 0.37
VRK3-217ENST00000599538 RFX7Q2KHR2 1363 aa17.36■□□□□ 0.37
VRK3-217ENST00000599538 BRD1O95696 1058 aa17.36■□□□□ 0.37
VRK3-217ENST00000599538 MCMDC2Q4G0Z9 681 aa17.36■□□□□ 0.37
VRK3-217ENST00000599538 VPS53Q5VIR6 699 aa17.36■□□□□ 0.37
VRK3-217ENST00000599538 CAMTA2O94983 1202 aa17.35■□□□□ 0.37
VRK3-217ENST00000599538 HCLS1P14317 486 aaPredicted RBP17.35■□□□□ 0.37
VRK3-217ENST00000599538 ST3GAL1Q11201 340 aa17.35■□□□□ 0.37
VRK3-217ENST00000599538 USPL1Q5W0Q7 1092 aa17.35■□□□□ 0.37
VRK3-217ENST00000599538 PI16Q6UXB8 463 aa17.35■□□□□ 0.37
VRK3-217ENST00000599538 FBXO3Q9UK99 471 aa17.35■□□□□ 0.37
VRK3-217ENST00000599538 PDE8AO60658 829 aa17.35■□□□□ 0.37
VRK3-217ENST00000599538 FKBP4Q02790 459 aaKnown RBP eCLIP17.35■□□□□ 0.37
VRK3-217ENST00000599538 ANKRD18BA2A2Z9 1011 aa17.34■□□□□ 0.37
VRK3-217ENST00000599538 METTL24Q5JXM2 366 aa17.34■□□□□ 0.37
VRK3-217ENST00000599538 SMIM5Q71RC9 77 aa17.34■□□□□ 0.37
VRK3-217ENST00000599538 LMBRD1Q9NUN5 540 aa17.34■□□□□ 0.37
VRK3-217ENST00000599538 CCDC83Q8IWF9 413 aa17.33■□□□□ 0.37
VRK3-217ENST00000599538 BRPF3Q9ULD4 1205 aa17.33■□□□□ 0.37
VRK3-217ENST00000599538 AKAP2Q9Y2D5 859 aa17.33■□□□□ 0.37
VRK3-217ENST00000599538 A0A0G2JLW4 131 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 GOLGA6L22H0YM25 854 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 VPS72Q15906 364 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 ME3Q16798 604 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 TTC39AQ5SRH9 613 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 GORABQ5T7V8 394 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 VGLL2Q8N8G2 317 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 CNNM1Q9NRU3 951 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 TPCN1Q9ULQ1 816 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 SH3TC1Q8TE82 1336 aa17.33■□□□□ 0.36
VRK3-217ENST00000599538 CYP21A2P08686 494 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 ATP2B3Q16720 1220 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 CCDC158Q5M9N0 1113 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 ZMYM1Q5SVZ6 1142 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 FAM182BQ5T319 152 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 RNF20Q5VTR2 975 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 NECAB1Q8N987 351 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 RREB1Q92766 1687 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 FSD2A1L4K1 749 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 ZAP70P43403 619 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 TSGA10IPQ3SY00 556 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 FOXD4L6Q3SYB3 417 aaPredicted RBP17.32■□□□□ 0.36
VRK3-217ENST00000599538 BLOC1S2Q6QNY1 142 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 FOXD4L3Q6VB84 417 aaPredicted RBP17.32■□□□□ 0.36
VRK3-217ENST00000599538 IL27Q8NEV9 243 aa17.32■□□□□ 0.36
VRK3-217ENST00000599538 HELBQ8NG08 1087 aaPredicted RBP17.32■□□□□ 0.36
VRK3-217ENST00000599538 PRPF40AO75400 957 aaKnown RBP17.31■□□□□ 0.36
VRK3-217ENST00000599538 LINC00116Q8NCU8 138 aa17.31■□□□□ 0.36
VRK3-217ENST00000599538 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.31■□□□□ 0.36
VRK3-217ENST00000599538 DDX49Q9Y6V7 483 aaKnown RBP17.31■□□□□ 0.36
VRK3-217ENST00000599538 MAST3O60307 1309 aa17.31■□□□□ 0.36
VRK3-217ENST00000599538 SNAP23O00161 211 aa17.3■□□□□ 0.36
VRK3-217ENST00000599538 RPS6KB1P23443 525 aa17.3■□□□□ 0.36
VRK3-217ENST00000599538 PSMA5P28066 241 aa17.3■□□□□ 0.36
VRK3-217ENST00000599538 TOB2Q14106 344 aaPredicted RBP17.3■□□□□ 0.36
VRK3-217ENST00000599538 SKOR2Q2VWA4 1001 aaPredicted RBP17.3■□□□□ 0.36
VRK3-217ENST00000599538 OSBP2Q969R2 916 aa17.3■□□□□ 0.36
VRK3-217ENST00000599538 SEC31BQ9NQW1 1179 aa17.3■□□□□ 0.36
VRK3-217ENST00000599538 M0R2C6 588 aa17.3■□□□□ 0.36
VRK3-217ENST00000599538 RNF113AO15541 343 aaKnown RBP17.3■□□□□ 0.36
VRK3-217ENST00000599538 HELLSQ9NRZ9 838 aa17.3■□□□□ 0.36
VRK3-217ENST00000599538 HMG20BQ9P0W2 317 aa17.3■□□□□ 0.36
VRK3-217ENST00000599538 NIP7Q9Y221 180 aaKnown RBP eCLIP17.3■□□□□ 0.36
VRK3-217ENST00000599538 MCAMP43121 646 aa17.29■□□□□ 0.36
VRK3-217ENST00000599538 STOX1Q6ZVD7 989 aa17.29■□□□□ 0.36
VRK3-217ENST00000599538 GAS2L3Q86XJ1 694 aa17.29■□□□□ 0.36
VRK3-217ENST00000599538 FNBP4Q8N3X1 1017 aaPredicted RBP17.29■□□□□ 0.36
VRK3-217ENST00000599538 SMARCC1Q92922 1105 aaPredicted RBP17.29■□□□□ 0.36
VRK3-217ENST00000599538 UTP14AQ9BVJ6 771 aaKnown RBP17.29■□□□□ 0.36
VRK3-217ENST00000599538 U3KPZ7 1027 aaPredicted RBP17.29■□□□□ 0.36
VRK3-217ENST00000599538 PDE8BO95263 885 aa17.29■□□□□ 0.36
VRK3-217ENST00000599538 PTMSP20962 102 aa17.29■□□□□ 0.36
VRK3-217ENST00000599538 KLHL40Q2TBA0 621 aa17.29■□□□□ 0.36
VRK3-217ENST00000599538 AKAP11Q9UKA4 1901 aa17.28■□□□□ 0.36
VRK3-217ENST00000599538 COL5A3P25940 1745 aaPredicted RBP17.28■□□□□ 0.36
VRK3-217ENST00000599538 CICQ96RK0 1608 aaPredicted RBP17.28■□□□□ 0.36
VRK3-217ENST00000599538 GOLGA6L3A6NEY3 463 aa17.28■□□□□ 0.36
VRK3-217ENST00000599538 NTSR2O95665 410 aa17.28■□□□□ 0.36
VRK3-217ENST00000599538 HSPD1P10809 573 aaKnown RBP17.28■□□□□ 0.36
VRK3-217ENST00000599538 SYT1P21579 422 aa17.28■□□□□ 0.36
VRK3-217ENST00000599538 SMC3Q9UQE7 1217 aa17.28■□□□□ 0.36
VRK3-217ENST00000599538 SPEF2Q9C093 1822 aa17.28■□□□□ 0.36
VRK3-217ENST00000599538 GPT2Q8TD30 523 aa17.27■□□□□ 0.36
VRK3-217ENST00000599538 ZSCAN31Q96LW9 406 aaPredicted RBP17.27■□□□□ 0.36
VRK3-217ENST00000599538 NSFL1CQ9UNZ2 370 aaKnown RBP17.27■□□□□ 0.36
VRK3-217ENST00000599538 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.27■□□□□ 0.36
VRK3-217ENST00000599538 DDX60Q8IY21 1712 aaKnown RBP17.27■□□□□ 0.36
VRK3-217ENST00000599538 FOXP2O15409 715 aa17.27■□□□□ 0.35
VRK3-217ENST00000599538 XRCC6P12956 609 aaKnown RBP eCLIP17.27■□□□□ 0.35
VRK3-217ENST00000599538 GJB2P29033 226 aa17.27■□□□□ 0.35
VRK3-217ENST00000599538 PHKA1P46020 1223 aa17.27■□□□□ 0.35
VRK3-217ENST00000599538 NEK1Q96PY6 1258 aa17.27■□□□□ 0.35
VRK3-217ENST00000599538 SH2B1Q9NRF2 756 aaPredicted RBP17.27■□□□□ 0.35
VRK3-217ENST00000599538 USP21Q9UK80 565 aa17.27■□□□□ 0.35
VRK3-217ENST00000599538 TCHHQ07283 1943 aa17.27■□□□□ 0.35
VRK3-217ENST00000599538 COL4A1P02462 1669 aa17.26■□□□□ 0.35
VRK3-217ENST00000599538 TTLL5Q6EMB2 1281 aa17.26■□□□□ 0.35
VRK3-217ENST00000599538 DSCC1Q9BVC3 393 aa17.26■□□□□ 0.35
VRK3-217ENST00000599538 LRRC2Q9BYS8 371 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms