RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 GRAPLQ8TC17 118 aaPredicted RBP18.96■□□□□ 0.63
UPF1-206ENST00000598471 BSDC1Q9NW68 430 aaPredicted RBP18.96■□□□□ 0.63
UPF1-206ENST00000598471 FPGT-TNNI3KV9GXZ4 949 aa18.96■□□□□ 0.63
UPF1-206ENST00000598471 AOX1Q06278 1338 aa18.96■□□□□ 0.63
UPF1-206ENST00000598471 CELF1Q92879 486 aaKnown RBP18.95■□□□□ 0.62
UPF1-206ENST00000598471 FHDC1Q9C0D6 1143 aaPredicted RBP18.95■□□□□ 0.62
UPF1-206ENST00000598471 OSBPL3Q9H4L5 887 aa18.95■□□□□ 0.62
UPF1-206ENST00000598471 ZNF609O15014 1411 aa18.94■□□□□ 0.62
UPF1-206ENST00000598471 NPR1P16066 1061 aa18.94■□□□□ 0.62
UPF1-206ENST00000598471 HOXA10P31260 410 aaPredicted RBP18.94■□□□□ 0.62
UPF1-206ENST00000598471 PDE1AP54750 535 aa18.94■□□□□ 0.62
UPF1-206ENST00000598471 OTUD7AQ8TE49 926 aaPredicted RBP18.94■□□□□ 0.62
UPF1-206ENST00000598471 EAF2Q96CJ1 260 aaPredicted RBP18.94■□□□□ 0.62
UPF1-206ENST00000598471 CRAMP1Q96RY5 1269 aa18.94■□□□□ 0.62
UPF1-206ENST00000598471 STAP2Q9UGK3 403 aa18.94■□□□□ 0.62
UPF1-206ENST00000598471 TTC41PQ6P2S7 1318 aa18.94■□□□□ 0.62
UPF1-206ENST00000598471 SALL3Q9BXA9 1300 aa18.94■□□□□ 0.62
UPF1-206ENST00000598471 SRCAPQ6ZRS2 3230 aa18.93■□□□□ 0.62
UPF1-206ENST00000598471 PDE8BO95263 885 aa18.93■□□□□ 0.62
UPF1-206ENST00000598471 ATP2B3Q16720 1220 aa18.93■□□□□ 0.62
UPF1-206ENST00000598471 TMC4Q7Z404 712 aa18.93■□□□□ 0.62
UPF1-206ENST00000598471 SYT17Q9BSW7 474 aa18.93■□□□□ 0.62
UPF1-206ENST00000598471 ANKRD31Q8N7Z5 1873 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 C10orf71Q711Q0 1435 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 H0YIN7 160 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 ERC2O15083 957 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 BBOX1O75936 387 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 PUM3Q15397 648 aaKnown RBP18.92■□□□□ 0.62
UPF1-206ENST00000598471 KLHL34Q8N239 644 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 MASTLQ96GX5 879 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 NEUROD6Q96NK8 337 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 ANKRD2Q9GZV1 360 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 CCDC8Q9H0W5 538 aaPredicted RBP18.92■□□□□ 0.62
UPF1-206ENST00000598471 ECHDC1Q9NTX5 307 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 SPEF2Q9C093 1822 aa18.92■□□□□ 0.62
UPF1-206ENST00000598471 A0A1B0GUL7 405 aa18.91■□□□□ 0.62
UPF1-206ENST00000598471 SRGNP10124 158 aa18.91■□□□□ 0.62
UPF1-206ENST00000598471 ALDH1B1P30837 517 aa18.91■□□□□ 0.62
UPF1-206ENST00000598471 CHRNDQ07001 517 aa18.91■□□□□ 0.62
UPF1-206ENST00000598471 BMP2KLQ5H9B9 411 aa18.91■□□□□ 0.62
UPF1-206ENST00000598471 TTC22Q5TAA0 569 aa18.91■□□□□ 0.62
UPF1-206ENST00000598471 C2CD5Q86YS7 1000 aa18.91■□□□□ 0.62
UPF1-206ENST00000598471 VGLL2Q8N8G2 317 aa18.91■□□□□ 0.62
UPF1-206ENST00000598471 SLC5A1P13866 664 aa18.9■□□□□ 0.62
UPF1-206ENST00000598471 GORABQ5T7V8 394 aa18.9■□□□□ 0.62
UPF1-206ENST00000598471 MINPP1Q9UNW1 487 aa18.9■□□□□ 0.62
UPF1-206ENST00000598471 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.9■□□□□ 0.62
UPF1-206ENST00000598471 GLRX3O76003 335 aaKnown RBP18.89■□□□□ 0.61
UPF1-206ENST00000598471 STYK1Q6J9G0 422 aa18.89■□□□□ 0.61
UPF1-206ENST00000598471 LPIN2Q92539 896 aa18.89■□□□□ 0.61
UPF1-206ENST00000598471 DBNLQ9UJU6 430 aaKnown RBP18.89■□□□□ 0.61
UPF1-206ENST00000598471 IFIT1P09914 478 aaKnown RBP18.88■□□□□ 0.61
UPF1-206ENST00000598471 TIMM10P62072 90 aa18.88■□□□□ 0.61
UPF1-206ENST00000598471 HELBQ8NG08 1087 aaPredicted RBP18.88■□□□□ 0.61
UPF1-206ENST00000598471 DBNDD2Q9BQY9 259 aa18.88■□□□□ 0.61
UPF1-206ENST00000598471 TMX4Q9H1E5 349 aaPredicted RBP18.88■□□□□ 0.61
UPF1-206ENST00000598471 TLR7Q9NYK1 1049 aaKnown RBP18.88■□□□□ 0.61
UPF1-206ENST00000598471 COL4A1P02462 1669 aa18.88■□□□□ 0.61
UPF1-206ENST00000598471 PPEF1O14829 653 aaPredicted RBP18.87■□□□□ 0.61
UPF1-206ENST00000598471 COL11A2P13942 1736 aaPredicted RBP18.87■□□□□ 0.61
UPF1-206ENST00000598471 KCNJ4P48050 445 aa18.87■□□□□ 0.61
UPF1-206ENST00000598471 UBE4AQ14139 1066 aa18.87■□□□□ 0.61
UPF1-206ENST00000598471 CCDC158Q5M9N0 1113 aa18.87■□□□□ 0.61
UPF1-206ENST00000598471 TSHZ3Q63HK5 1081 aa18.87■□□□□ 0.61
UPF1-206ENST00000598471 NLGN2Q8NFZ4 835 aa18.87■□□□□ 0.61
UPF1-206ENST00000598471 ZNF622Q969S3 477 aaKnown RBP eCLIP18.87■□□□□ 0.61
UPF1-206ENST00000598471 TAF5LO75529 589 aa18.86■□□□□ 0.61
UPF1-206ENST00000598471 FGFR2P21802 821 aa18.86■□□□□ 0.61
UPF1-206ENST00000598471 PI4K2BQ8TCG2 481 aa18.86■□□□□ 0.61
UPF1-206ENST00000598471 CNKSR1Q969H4 720 aa18.86■□□□□ 0.61
UPF1-206ENST00000598471 XAGE2Q96GT9 111 aa18.86■□□□□ 0.61
UPF1-206ENST00000598471 CD2APQ9Y5K6 639 aa18.86■□□□□ 0.61
UPF1-206ENST00000598471 TAF1P21675 1872 aa18.86■□□□□ 0.61
UPF1-206ENST00000598471 XDHP47989 1333 aa18.85■□□□□ 0.61
UPF1-206ENST00000598471 GSPT1P15170 499 aaKnown RBP18.85■□□□□ 0.61
UPF1-206ENST00000598471 ATP5JP18859 108 aa18.85■□□□□ 0.61
UPF1-206ENST00000598471 TTC39AQ5SRH9 613 aa18.85■□□□□ 0.61
UPF1-206ENST00000598471 ARAP2Q8WZ64 1704 aa18.84■□□□□ 0.61
UPF1-206ENST00000598471 SP8Q8IXZ3 490 aa18.84■□□□□ 0.61
UPF1-206ENST00000598471 ANKIB1Q9P2G1 1089 aa18.84■□□□□ 0.61
UPF1-206ENST00000598471 LEMD3Q9Y2U8 911 aa18.84■□□□□ 0.61
UPF1-206ENST00000598471 TRIM6-TRIM34B2RNG4 842 aa18.83■□□□□ 0.6
UPF1-206ENST00000598471 CHRNA5P30532 468 aa18.83■□□□□ 0.6
UPF1-206ENST00000598471 ADORA1P30542 326 aa18.83■□□□□ 0.6
UPF1-206ENST00000598471 TGFB2P61812 414 aa18.83■□□□□ 0.6
UPF1-206ENST00000598471 CNTROBQ8N137 903 aa18.83■□□□□ 0.6
UPF1-206ENST00000598471 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.83■□□□□ 0.6
UPF1-206ENST00000598471 ATP6V0A2Q9Y487 856 aa18.83■□□□□ 0.6
UPF1-206ENST00000598471 A0A1B0GUL6 1792 aa18.83■□□□□ 0.6
UPF1-206ENST00000598471 KIF13BQ9NQT8 1826 aa18.82■□□□□ 0.6
UPF1-206ENST00000598471 UQCRFS1P1P0C7P4 283 aa18.82■□□□□ 0.6
UPF1-206ENST00000598471 SDSP20132 328 aa18.82■□□□□ 0.6
UPF1-206ENST00000598471 ZNF804BA4D1E1 1349 aa18.81■□□□□ 0.6
UPF1-206ENST00000598471 LRRC37AA6NMS7 1700 aa18.81■□□□□ 0.6
UPF1-206ENST00000598471 A0A0G2JLW4 131 aa18.81■□□□□ 0.6
UPF1-206ENST00000598471 ATP2B4P23634 1241 aa18.81■□□□□ 0.6
UPF1-206ENST00000598471 CAVIN4Q5BKX8 364 aa18.81■□□□□ 0.6
UPF1-206ENST00000598471 PRPF40BQ6NWY9 871 aaKnown RBP18.81■□□□□ 0.6
UPF1-206ENST00000598471 CASC1Q6TDU7 716 aa18.81■□□□□ 0.6
UPF1-206ENST00000598471 RILPL2Q969X0 211 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms