RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 FKBP1BP68106 108 aa16.71■□□□□ 0.27
SCAF1-202ENST00000595242 NOM1Q5C9Z4 860 aaKnown RBP16.71■□□□□ 0.27
SCAF1-202ENST00000595242 PSME4Q14997 1843 aa16.7■□□□□ 0.26
SCAF1-202ENST00000595242 RTL9Q8NET4 1388 aa16.7■□□□□ 0.26
SCAF1-202ENST00000595242 ANGEL2Q5VTE6 544 aaKnown RBP16.69■□□□□ 0.26
SCAF1-202ENST00000595242 MOB2Q70IA6 237 aa16.69■□□□□ 0.26
SCAF1-202ENST00000595242 TMC4Q7Z404 712 aa16.69■□□□□ 0.26
SCAF1-202ENST00000595242 NSFL1CQ9UNZ2 370 aaKnown RBP16.69■□□□□ 0.26
SCAF1-202ENST00000595242 CEP290O15078 2479 aa16.69■□□□□ 0.26
SCAF1-202ENST00000595242 POTEFA5A3E0 1075 aa16.68■□□□□ 0.26
SCAF1-202ENST00000595242 C6orf229H3BNL8 230 aa16.68■□□□□ 0.26
SCAF1-202ENST00000595242 ECE2O60344 883 aa16.68■□□□□ 0.26
SCAF1-202ENST00000595242 FKTNO75072 461 aa16.68■□□□□ 0.26
SCAF1-202ENST00000595242 U2AF1L5P0DN76 240 aaPredicted RBP16.68■□□□□ 0.26
SCAF1-202ENST00000595242 TM4SF4P48230 202 aa16.68■□□□□ 0.26
SCAF1-202ENST00000595242 EIF4A1P60842 406 aaKnown RBP16.68■□□□□ 0.26
SCAF1-202ENST00000595242 U2AF1Q01081 240 aaKnown RBP eCLIP16.68■□□□□ 0.26
SCAF1-202ENST00000595242 DOK7Q18PE1 504 aa16.68■□□□□ 0.26
SCAF1-202ENST00000595242 CFAP53Q96M91 514 aa16.68■□□□□ 0.26
SCAF1-202ENST00000595242 PPP2R1AP30153 589 aa16.67■□□□□ 0.26
SCAF1-202ENST00000595242 SCARF1Q14162 830 aa16.67■□□□□ 0.26
SCAF1-202ENST00000595242 THUMPD2Q9BTF0 503 aaKnown RBP16.67■□□□□ 0.26
SCAF1-202ENST00000595242 POLLQ9UGP5 575 aa16.67■□□□□ 0.26
SCAF1-202ENST00000595242 NUDCQ9Y266 331 aa16.67■□□□□ 0.26
SCAF1-202ENST00000595242 TRIOBPQ9H2D6 2365 aa16.67■□□□□ 0.26
SCAF1-202ENST00000595242 UBE2Q2LH0YL09 131 aa16.66■□□□□ 0.26
SCAF1-202ENST00000595242 VIL1P09327 827 aaKnown RBP16.66■□□□□ 0.26
SCAF1-202ENST00000595242 INTS3Q68E01 1043 aaKnown RBP16.66■□□□□ 0.26
SCAF1-202ENST00000595242 ERBB4Q15303 1308 aa16.66■□□□□ 0.26
SCAF1-202ENST00000595242 NLRP10Q86W26 655 aa16.65■□□□□ 0.26
SCAF1-202ENST00000595242 R3HDMLQ9H3Y0 253 aa16.65■□□□□ 0.26
SCAF1-202ENST00000595242 TRMT112Q9UI30 125 aaKnown RBP16.65■□□□□ 0.26
SCAF1-202ENST00000595242 SUPT16HQ9Y5B9 1047 aaKnown RBP16.65■□□□□ 0.26
SCAF1-202ENST00000595242 SH3TC1Q8TE82 1336 aa16.65■□□□□ 0.26
SCAF1-202ENST00000595242 GPSM2P81274 684 aa16.64■□□□□ 0.25
SCAF1-202ENST00000595242 MKRN3Q13064 507 aaKnown RBP16.64■□□□□ 0.25
SCAF1-202ENST00000595242 LRP10Q7Z4F1 713 aa16.64■□□□□ 0.25
SCAF1-202ENST00000595242 EYA3Q99504 573 aa16.64■□□□□ 0.25
SCAF1-202ENST00000595242 CFHR5Q9BXR6 569 aa16.64■□□□□ 0.25
SCAF1-202ENST00000595242 SCAF8Q9UPN6 1271 aaKnown RBP16.64■□□□□ 0.25
SCAF1-202ENST00000595242 ZNF280AP59817 542 aaPredicted RBP16.63■□□□□ 0.25
SCAF1-202ENST00000595242 SREBF2Q12772 1141 aa16.63■□□□□ 0.25
SCAF1-202ENST00000595242 HSP90AB3PQ58FF7 597 aa16.63■□□□□ 0.25
SCAF1-202ENST00000595242 CELF1Q92879 486 aaKnown RBP16.63■□□□□ 0.25
SCAF1-202ENST00000595242 COLQQ9Y215 455 aaPredicted RBP16.63■□□□□ 0.25
SCAF1-202ENST00000595242 COL4A1P02462 1669 aa16.62■□□□□ 0.25
SCAF1-202ENST00000595242 TTLL12Q14166 644 aaPredicted RBP16.62■□□□□ 0.25
SCAF1-202ENST00000595242 PDIA6Q15084 440 aa16.62■□□□□ 0.25
SCAF1-202ENST00000595242 TRIM17Q9Y577 477 aa16.62■□□□□ 0.25
SCAF1-202ENST00000595242 PITPNM2Q9BZ72 1349 aa16.62■□□□□ 0.25
SCAF1-202ENST00000595242 ANXA1P04083 346 aa16.61■□□□□ 0.25
SCAF1-202ENST00000595242 PROSER3Q2NL68 480 aa16.61■□□□□ 0.25
SCAF1-202ENST00000595242 PRAMEF18Q5VWM3 479 aa16.61■□□□□ 0.25
SCAF1-202ENST00000595242 AGBL3Q8NEM8 1001 aa16.61■□□□□ 0.25
SCAF1-202ENST00000595242 TBC1D16Q8TBP0 767 aa16.61■□□□□ 0.25
SCAF1-202ENST00000595242 ZC3H12CQ9C0D7 883 aaKnown RBP16.61■□□□□ 0.25
SCAF1-202ENST00000595242 MYOZ2Q9NPC6 264 aa16.61■□□□□ 0.25
SCAF1-202ENST00000595242 G3V3G9 751 aa16.6■□□□□ 0.25
SCAF1-202ENST00000595242 EN2P19622 333 aaPredicted RBP16.6■□□□□ 0.25
SCAF1-202ENST00000595242 EIF2S2P20042 333 aaKnown RBP16.6■□□□□ 0.25
SCAF1-202ENST00000595242 TCIRG1Q13488 830 aa16.6■□□□□ 0.25
SCAF1-202ENST00000595242 DCAF8Q5TAQ9 597 aa16.6■□□□□ 0.25
SCAF1-202ENST00000595242 OTOP1Q7RTM1 612 aa16.6■□□□□ 0.25
SCAF1-202ENST00000595242 ZNF428Q96B54 188 aa16.6■□□□□ 0.25
SCAF1-202ENST00000595242 LAMB1P07942 1786 aa16.59■□□□□ 0.25
SCAF1-202ENST00000595242 USP17L8P0C7I0 530 aa16.59■□□□□ 0.25
SCAF1-202ENST00000595242 RSBN1LQ6PCB5 846 aaPredicted RBP16.59■□□□□ 0.25
SCAF1-202ENST00000595242 ZNF609O15014 1411 aa16.59■□□□□ 0.25
SCAF1-202ENST00000595242 DLL1O00548 723 aa16.58■□□□□ 0.24
SCAF1-202ENST00000595242 AIMP1Q12904 312 aaKnown RBP16.58■□□□□ 0.24
SCAF1-202ENST00000595242 COPS6Q7L5N1 327 aa16.58■□□□□ 0.24
SCAF1-202ENST00000595242 A0A0C4DFX4 3053 aa16.57■□□□□ 0.24
SCAF1-202ENST00000595242 ALDH1A1P00352 501 aa16.57■□□□□ 0.24
SCAF1-202ENST00000595242 SF3B3Q15393 1217 aaKnown RBP16.57■□□□□ 0.24
SCAF1-202ENST00000595242 NECTIN2Q92692 538 aa16.57■□□□□ 0.24
SCAF1-202ENST00000595242 NEFLP07196 543 aa16.56■□□□□ 0.24
SCAF1-202ENST00000595242 NEFMP07197 916 aa16.56■□□□□ 0.24
SCAF1-202ENST00000595242 NF2P35240 595 aa16.56■□□□□ 0.24
SCAF1-202ENST00000595242 PTPN12Q05209 780 aaKnown RBP16.56■□□□□ 0.24
SCAF1-202ENST00000595242 XAGE3Q8WTP9 111 aa16.56■□□□□ 0.24
SCAF1-202ENST00000595242 GMLQ99445 158 aa16.56■□□□□ 0.24
SCAF1-202ENST00000595242 PTPN22Q9Y2R2 807 aa16.56■□□□□ 0.24
SCAF1-202ENST00000595242 COL6A3P12111 3177 aa16.56■□□□□ 0.24
SCAF1-202ENST00000595242 UFL1O94874 794 aa16.55■□□□□ 0.24
SCAF1-202ENST00000595242 RPS8P62241 208 aaKnown RBP16.55■□□□□ 0.24
SCAF1-202ENST00000595242 NBPF9Q3BBW0 867 aa16.55■□□□□ 0.24
SCAF1-202ENST00000595242 FAM89AQ96GI7 184 aa16.55■□□□□ 0.24
SCAF1-202ENST00000595242 PODXL2Q9NZ53 605 aa16.55■□□□□ 0.24
SCAF1-202ENST00000595242 ZNF646O15015 1829 aaPredicted RBP16.54■□□□□ 0.24
SCAF1-202ENST00000595242 RANBP2P49792 3224 aaKnown RBP16.54■□□□□ 0.24
SCAF1-202ENST00000595242 SPRYD7Q5W111 196 aa16.54■□□□□ 0.24
SCAF1-202ENST00000595242 IFNL1Q8IU54 200 aa16.54■□□□□ 0.24
SCAF1-202ENST00000595242 ARMC5Q96C12 935 aa16.54■□□□□ 0.24
SCAF1-202ENST00000595242 ANKIB1Q9P2G1 1089 aa16.54■□□□□ 0.24
SCAF1-202ENST00000595242 PRKG1Q13976 671 aa16.53■□□□□ 0.24
SCAF1-202ENST00000595242 ERICH6BQ5W0A0 696 aa16.53■□□□□ 0.24
SCAF1-202ENST00000595242 ARMC9Q7Z3E5 817 aa16.53■□□□□ 0.24
SCAF1-202ENST00000595242 ERO1AQ96HE7 468 aa16.53■□□□□ 0.24
SCAF1-202ENST00000595242 TSPYL4Q9UJ04 414 aa16.53■□□□□ 0.24
SCAF1-202ENST00000595242 INHBEP58166 350 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms