RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 DTNBO60941 627 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 BLOC1S2Q6QNY1 142 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 CDC37L1Q7L3B6 337 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 ZNF710Q8N1W2 664 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 FAM227BQ96M60 508 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 SCAND2PQ9GZW5 306 aaPredicted RBP12.84□□□□□ -0.35
VPS4B-206ENST00000591475 PYCARDQ9ULZ3 195 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 TYRO3Q06418 890 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 G3BP1Q13283 466 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS4B-206ENST00000591475 SEPT12Q8IYM1 358 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 MRVI1Q9Y6F6 885 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 GOLGA6L4A6NEF3 574 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 LIG1P18858 919 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 RPS6KB1P23443 525 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 FERMT3Q86UX7 667 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 TSC1Q92574 1164 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 JARID2Q92833 1246 aaPredicted RBP12.83□□□□□ -0.36
VPS4B-206ENST00000591475 TNMDQ9H2S6 317 aa12.83□□□□□ -0.36
VPS4B-206ENST00000591475 PTCD1O75127 700 aaKnown RBP12.82□□□□□ -0.36
VPS4B-206ENST00000591475 SASH1O94885 1247 aa12.82□□□□□ -0.36
VPS4B-206ENST00000591475 RBM6P78332 1123 aaKnown RBP12.82□□□□□ -0.36
VPS4B-206ENST00000591475 CWF19L2Q2TBE0 894 aaKnown RBP12.82□□□□□ -0.36
VPS4B-206ENST00000591475 SPATA32Q96LK8 384 aa12.82□□□□□ -0.36
VPS4B-206ENST00000591475 FSD1Q9BTV5 496 aa12.82□□□□□ -0.36
VPS4B-206ENST00000591475 ATG3Q9NT62 314 aa12.82□□□□□ -0.36
VPS4B-206ENST00000591475 DDX19AQ9NUU7 478 aaKnown RBP12.82□□□□□ -0.36
VPS4B-206ENST00000591475 ASAP1Q9ULH1 1129 aa12.82□□□□□ -0.36
VPS4B-206ENST00000591475 CHMP3Q9Y3E7 222 aa12.82□□□□□ -0.36
VPS4B-206ENST00000591475 UTYO14607 1347 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 A0A0D9SFI3 127 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 PRAMEF22A3QJZ6 481 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 GRM8O00222 908 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 CAMK4Q16566 473 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 LINS1Q8NG48 757 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 EAF2Q96CJ1 260 aaPredicted RBP12.81□□□□□ -0.36
VPS4B-206ENST00000591475 ACSBG1Q96GR2 724 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 SUCLG2Q96I99 432 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 CCDC8Q9H0W5 538 aaPredicted RBP12.81□□□□□ -0.36
VPS4B-206ENST00000591475 HMG20BQ9P0W2 317 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 PAPPAQ13219 1627 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 MED23Q9ULK4 1368 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 DDX58O95786 925 aaKnown RBP12.81□□□□□ -0.36
VPS4B-206ENST00000591475 PROSER3Q2NL68 480 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 BCL2L12Q9HB09 334 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 DACT1Q9NYF0 836 aa12.81□□□□□ -0.36
VPS4B-206ENST00000591475 MYH15Q9Y2K3 1946 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 KCPQ6ZWJ8 1503 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 ITGB4P16144 1822 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 PTGS1P23219 599 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 ANO6Q4KMQ2 910 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 FAM173BQ6P4H8 233 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 LUZP1Q86V48 1076 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 LEO1Q8WVC0 666 aaPredicted RBP12.8□□□□□ -0.36
VPS4B-206ENST00000591475 TEX13AQ9BXU3 409 aaPredicted RBP12.8□□□□□ -0.36
VPS4B-206ENST00000591475 CLSTN2Q9H4D0 955 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 BICC1Q9H694 974 aaKnown RBP12.8□□□□□ -0.36
VPS4B-206ENST00000591475 PRDM4Q9UKN5 801 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 USP16Q9Y5T5 823 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 DOT1LQ8TEK3 1739 aa12.8□□□□□ -0.36
VPS4B-206ENST00000591475 UBR2Q8IWV8 1755 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 RIOK3O14730 519 aaKnown RBP12.79□□□□□ -0.36
VPS4B-206ENST00000591475 TOB2Q14106 344 aaPredicted RBP12.79□□□□□ -0.36
VPS4B-206ENST00000591475 TSGA10IPQ3SY00 556 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 RBM43Q6ZSC3 357 aaKnown RBP12.79□□□□□ -0.36
VPS4B-206ENST00000591475 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.79□□□□□ -0.36
VPS4B-206ENST00000591475 CKAP2LQ8IYA6 745 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 BOLA2Q9H3K6 86 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 CBX8Q9HC52 389 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 DDX21Q9NR30 783 aaKnown RBP eCLIP12.79□□□□□ -0.36
VPS4B-206ENST00000591475 KRT32Q14532 448 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 DRC7Q8IY82 874 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 KAZALD1Q96I82 304 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 TCEANC2Q96MN5 208 aa12.79□□□□□ -0.36
VPS4B-206ENST00000591475 TLR7Q9NYK1 1049 aaKnown RBP12.79□□□□□ -0.36
VPS4B-206ENST00000591475 TFIP11Q9UBB9 837 aaKnown RBP12.79□□□□□ -0.36
VPS4B-206ENST00000591475 KCNQ2O43526 872 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 TDRD7Q8NHU6 1098 aaKnown RBP12.78□□□□□ -0.36
VPS4B-206ENST00000591475 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.78□□□□□ -0.36
VPS4B-206ENST00000591475 FAM177BA6PVY3 158 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 RXRBP28702 533 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 ZNF75DP51815 510 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 STK3Q13188 491 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 COL9A3Q14050 684 aaPredicted RBP12.78□□□□□ -0.36
VPS4B-206ENST00000591475 PPP4R3BQ5MIZ7 849 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 CCDC186Q7Z3E2 898 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 PLA2G4DQ86XP0 818 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 PDCL2Q8N4E4 241 aa12.78□□□□□ -0.36
VPS4B-206ENST00000591475 SMARCC1Q92922 1105 aaPredicted RBP12.78□□□□□ -0.36
VPS4B-206ENST00000591475 CAVIN2O95810 425 aa12.77□□□□□ -0.37
VPS4B-206ENST00000591475 PDIA6Q15084 440 aa12.77□□□□□ -0.37
VPS4B-206ENST00000591475 KRT27Q7Z3Y8 459 aa12.77□□□□□ -0.37
VPS4B-206ENST00000591475 BICD2Q8TD16 824 aa12.77□□□□□ -0.37
VPS4B-206ENST00000591475 TRIM5Q9C035 493 aa12.77□□□□□ -0.37
VPS4B-206ENST00000591475 SIL1Q9H173 461 aa12.77□□□□□ -0.37
VPS4B-206ENST00000591475 TAF6LQ9Y6J9 622 aa12.77□□□□□ -0.37
VPS4B-206ENST00000591475 KAT6BQ8WYB5 2073 aa12.77□□□□□ -0.37
VPS4B-206ENST00000591475 EP400Q96L91 3159 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 CTIFO43310 598 aaKnown RBP12.76□□□□□ -0.37
VPS4B-206ENST00000591475 TAF5LO75529 589 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 STARD3NLO95772 234 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms