RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 BECN2A8MW95 431 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 NEMFO60524 1076 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 CYP21A2P08686 494 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 SCRN1Q12765 414 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 ESCO1Q5FWF5 840 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 C11orf57Q6ZUT1 292 aaPredicted RBP14.34□□□□□ -0.11
SHMT1-208ENST00000582352 ANKRD24Q8TF21 1146 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 MRFAP1L1Q96HT8 127 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 LLPHQ9BRT6 129 aaKnown RBP14.34□□□□□ -0.11
SHMT1-208ENST00000582352 KINO60870 393 aaKnown RBP14.34□□□□□ -0.11
SHMT1-208ENST00000582352 IQCB1Q15051 598 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 MCMDC2Q4G0Z9 681 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 EPHA10Q5JZY3 1008 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 NAA16Q6N069 864 aaPredicted RBP14.34□□□□□ -0.11
SHMT1-208ENST00000582352 CCAR1Q8IX12 1150 aaKnown RBP14.34□□□□□ -0.11
SHMT1-208ENST00000582352 LRRC2Q9BYS8 371 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 COPRSQ9NQ92 184 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 NDUFB9Q9Y6M9 179 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 FER1L4A9Z1Z3 1794 aa14.33□□□□□ -0.11
SHMT1-208ENST00000582352 HMGB1P09429 215 aaKnown RBP14.33□□□□□ -0.12
SHMT1-208ENST00000582352 FOSBP53539 338 aa14.33□□□□□ -0.12
SHMT1-208ENST00000582352 TFCP2Q12800 502 aa14.33□□□□□ -0.12
SHMT1-208ENST00000582352 CEP135Q66GS9 1140 aa14.33□□□□□ -0.12
SHMT1-208ENST00000582352 XAGE3Q8WTP9 111 aa14.33□□□□□ -0.12
SHMT1-208ENST00000582352 ZNF592Q92610 1267 aa14.33□□□□□ -0.12
SHMT1-208ENST00000582352 LRRC8AQ8IWT6 810 aa14.33□□□□□ -0.12
SHMT1-208ENST00000582352 SMARCC2Q8TAQ2 1214 aa14.33□□□□□ -0.12
SHMT1-208ENST00000582352 CGNQ9P2M7 1197 aaKnown RBP14.33□□□□□ -0.12
SHMT1-208ENST00000582352 C5P01031 1676 aa14.33□□□□□ -0.12
SHMT1-208ENST00000582352 PFKFB2O60825 505 aa14.32□□□□□ -0.12
SHMT1-208ENST00000582352 SEC62Q99442 399 aaKnown RBP14.32□□□□□ -0.12
SHMT1-208ENST00000582352 METTL22Q9BUU2 404 aaPredicted RBP14.32□□□□□ -0.12
SHMT1-208ENST00000582352 PTPDC1A2A3K4 754 aa14.32□□□□□ -0.12
SHMT1-208ENST00000582352 GCP02774 474 aa14.32□□□□□ -0.12
SHMT1-208ENST00000582352 DDX46Q7L014 1031 aaKnown RBP14.32□□□□□ -0.12
SHMT1-208ENST00000582352 NSUN7Q8NE18 718 aaKnown RBP14.32□□□□□ -0.12
SHMT1-208ENST00000582352 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.31□□□□□ -0.12
SHMT1-208ENST00000582352 ZNF790Q6PG37 636 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 ARHGEF25Q86VW2 580 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 ZNF396Q96N95 335 aaPredicted RBP14.31□□□□□ -0.12
SHMT1-208ENST00000582352 HAUS7Q99871 368 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 FTOQ9C0B1 505 aaKnown RBP eCLIP14.31□□□□□ -0.12
SHMT1-208ENST00000582352 RCOR1Q9UKL0 485 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 LMTK3Q96Q04 1460 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 CAMTA1Q9Y6Y1 1673 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 PTPN12Q05209 780 aaKnown RBP14.31□□□□□ -0.12
SHMT1-208ENST00000582352 COPS6Q7L5N1 327 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 DBNDD2Q9BQY9 259 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 GOLPH3LQ9H4A5 285 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 ANO10Q9NW15 660 aa14.31□□□□□ -0.12
SHMT1-208ENST00000582352 ADAMTS7Q9UKP4 1686 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 CHGBP05060 677 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 SKILP12757 684 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 FAM160A1Q05DH4 1040 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 SLC39A6Q13433 755 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 DHX32Q7L7V1 743 aaKnown RBP14.3□□□□□ -0.12
SHMT1-208ENST00000582352 CEP57L1Q8IYX8 460 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 OGFRQ9NZT2 677 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 SH3TC1Q8TE82 1336 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 AFDNP55196 1824 aaKnown RBP14.3□□□□□ -0.12
SHMT1-208ENST00000582352 LAMA4Q16363 1823 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 ADD1P35611 737 aaKnown RBP14.3□□□□□ -0.12
SHMT1-208ENST00000582352 ME1P48163 572 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 RBM6P78332 1123 aaKnown RBP14.3□□□□□ -0.12
SHMT1-208ENST00000582352 PTPN14Q15678 1187 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 ATL3Q6DD88 541 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 LMOD2Q6P5Q4 547 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 UBE3BQ7Z3V4 1068 aa14.3□□□□□ -0.12
SHMT1-208ENST00000582352 RBM33Q96EV2 1170 aaKnown RBP14.3□□□□□ -0.12
SHMT1-208ENST00000582352 NAP1L2Q9ULW6 460 aaPredicted RBP14.3□□□□□ -0.12
SHMT1-208ENST00000582352 KIF20AO95235 890 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 RFX5P48382 616 aaPredicted RBP14.29□□□□□ -0.12
SHMT1-208ENST00000582352 APOBRQ0VD83 1088 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 STOX1Q6ZVD7 989 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 FILIP1Q7Z7B0 1213 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 USP28Q96RU2 1077 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 NAT10Q9H0A0 1025 aaKnown RBP14.29□□□□□ -0.12
SHMT1-208ENST00000582352 SLIT3O75094 1523 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 ARID5BQ14865 1188 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 ANKRD13DQ6ZTN6 518 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 FSIP1Q8NA03 581 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 KBTBD3Q8NAB2 608 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 CTNNA3Q9UI47 895 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 USP16Q9Y5T5 823 aa14.29□□□□□ -0.12
SHMT1-208ENST00000582352 CCDC69A6NI79 296 aa14.28□□□□□ -0.12
SHMT1-208ENST00000582352 SNW1Q13573 536 aaKnown RBP14.28□□□□□ -0.12
SHMT1-208ENST00000582352 USP27XA6NNY8 438 aa14.28□□□□□ -0.12
SHMT1-208ENST00000582352 CCT2P78371 535 aaKnown RBP14.28□□□□□ -0.12
SHMT1-208ENST00000582352 DHX40Q8IX18 779 aaKnown RBP14.28□□□□□ -0.12
SHMT1-208ENST00000582352 CCDC9Q9Y3X0 531 aaKnown RBP14.28□□□□□ -0.12
SHMT1-208ENST00000582352 CTDNEP1O95476 244 aa14.28□□□□□ -0.12
SHMT1-208ENST00000582352 NAA30Q147X3 362 aaPredicted RBP14.28□□□□□ -0.12
SHMT1-208ENST00000582352 RABL6Q3YEC7 729 aaPredicted RBP14.28□□□□□ -0.12
SHMT1-208ENST00000582352 AOPEPQ8N6M6 819 aa14.28□□□□□ -0.12
SHMT1-208ENST00000582352 SLC52A2Q9HAB3 445 aa14.28□□□□□ -0.12
SHMT1-208ENST00000582352 PALLDQ8WX93 1383 aa14.27□□□□□ -0.12
SHMT1-208ENST00000582352 ZRSR1Q15695 479 aaKnown RBP14.27□□□□□ -0.12
SHMT1-208ENST00000582352 NYAP1Q6ZVC0 841 aa14.27□□□□□ -0.12
SHMT1-208ENST00000582352 GSDMDP57764 484 aa14.27□□□□□ -0.13
SHMT1-208ENST00000582352 ENGASEQ8NFI3 743 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms