RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LPIN3Q9BQK8 851 aa9.74□□□□□ -0.85
NUP88-213ENST00000576862 DCTN4Q9UJW0 460 aa9.74□□□□□ -0.85
NUP88-213ENST00000576862 M0R082 166 aa9.73□□□□□ -0.85
NUP88-213ENST00000576862 GPR182O15218 404 aa9.73□□□□□ -0.85
NUP88-213ENST00000576862 PSAPL1Q6NUJ1 521 aa9.73□□□□□ -0.85
NUP88-213ENST00000576862 ZNF417Q8TAU3 575 aa9.73□□□□□ -0.85
NUP88-213ENST00000576862 ZNF587Q96SQ5 575 aaPredicted RBP9.73□□□□□ -0.85
NUP88-213ENST00000576862 KIF4AO95239 1232 aa9.72□□□□□ -0.85
NUP88-213ENST00000576862 SND1Q7KZF4 910 aaKnown RBP eCLIP9.72□□□□□ -0.85
NUP88-213ENST00000576862 NUDT8Q8WV74 236 aa9.72□□□□□ -0.85
NUP88-213ENST00000576862 KANSL3Q9P2N6 904 aa9.72□□□□□ -0.85
NUP88-213ENST00000576862 MAPK1P28482 360 aa9.71□□□□□ -0.86
NUP88-213ENST00000576862 HYAL2Q12891 473 aa9.71□□□□□ -0.86
NUP88-213ENST00000576862 PDE3BQ13370 1112 aa9.71□□□□□ -0.86
NUP88-213ENST00000576862 TMC7Q7Z402 723 aa9.71□□□□□ -0.86
NUP88-213ENST00000576862 SNX29Q8TEQ0 813 aa9.71□□□□□ -0.86
NUP88-213ENST00000576862 PRDM6Q9NQX0 595 aa9.71□□□□□ -0.86
NUP88-213ENST00000576862 FRRS1LQ9P0K9 344 aa9.71□□□□□ -0.86
NUP88-213ENST00000576862 SALL4Q9UJQ4 1053 aa9.71□□□□□ -0.86
NUP88-213ENST00000576862 PHF20L1A8MW92 1017 aa9.7□□□□□ -0.86
NUP88-213ENST00000576862 EREGO14944 169 aa9.7□□□□□ -0.86
NUP88-213ENST00000576862 PHACTR2O75167 634 aa9.7□□□□□ -0.86
NUP88-213ENST00000576862 EIF2AK2P19525 551 aaKnown RBP9.7□□□□□ -0.86
NUP88-213ENST00000576862 CES1P23141 567 aa9.7□□□□□ -0.86
NUP88-213ENST00000576862 GRIK5Q16478 980 aa9.7□□□□□ -0.86
NUP88-213ENST00000576862 BEND7Q8N7W2 519 aaPredicted RBP9.7□□□□□ -0.86
NUP88-213ENST00000576862 SCARF2Q96GP6 870 aaPredicted RBP9.7□□□□□ -0.86
NUP88-213ENST00000576862 ZFYVE28Q9HCC9 887 aa9.7□□□□□ -0.86
NUP88-213ENST00000576862 MKL2Q9ULH7 1088 aa9.7□□□□□ -0.86
NUP88-213ENST00000576862 ELMSAN1Q6PJG2 1045 aa9.69□□□□□ -0.86
NUP88-213ENST00000576862 CEP120Q8N960 986 aa9.69□□□□□ -0.86
NUP88-213ENST00000576862 TMC1Q8TDI8 760 aa9.69□□□□□ -0.86
NUP88-213ENST00000576862 TRIM11Q96F44 468 aa9.69□□□□□ -0.86
NUP88-213ENST00000576862 NIF3L1Q9GZT8 377 aa9.69□□□□□ -0.86
NUP88-213ENST00000576862 SMG9Q9H0W8 520 aaKnown RBP9.69□□□□□ -0.86
NUP88-213ENST00000576862 JPH1Q9HDC5 661 aaPredicted RBP9.69□□□□□ -0.86
NUP88-213ENST00000576862 RGS9O75916 674 aaPredicted RBP9.68□□□□□ -0.86
NUP88-213ENST00000576862 GHRHP01286 108 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 NID1P14543 1247 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 AFF1P51825 1210 aaKnown RBP9.68□□□□□ -0.86
NUP88-213ENST00000576862 ORC1Q13415 861 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 PODNQ7Z5L7 613 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 TTC9Q92623 222 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 PMEPA1Q969W9 287 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 ALKBH8Q96BT7 664 aaKnown RBP9.68□□□□□ -0.86
NUP88-213ENST00000576862 PLD4Q96BZ4 506 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 DMRTB1Q96MA1 342 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 GZF1Q9H116 711 aaPredicted RBP9.68□□□□□ -0.86
NUP88-213ENST00000576862 SUV39H2Q9H5I1 410 aa9.68□□□□□ -0.86
NUP88-213ENST00000576862 GNB5O14775 395 aa9.67□□□□□ -0.86
NUP88-213ENST00000576862 LILRB5O75023 590 aa9.67□□□□□ -0.86
NUP88-213ENST00000576862 ACPPP15309 386 aa9.67□□□□□ -0.86
NUP88-213ENST00000576862 GSK3AP49840 483 aa9.67□□□□□ -0.86
NUP88-213ENST00000576862 ATP11AP98196 1134 aa9.67□□□□□ -0.86
NUP88-213ENST00000576862 NCAPG2Q86XI2 1143 aa9.67□□□□□ -0.86
NUP88-213ENST00000576862 DSC3Q14574 896 aa9.66□□□□□ -0.86
NUP88-213ENST00000576862 USPL1Q5W0Q7 1092 aa9.66□□□□□ -0.86
NUP88-213ENST00000576862 ILDR2Q71H61 639 aa9.66□□□□□ -0.86
NUP88-213ENST00000576862 POLR3DP05423 398 aaPredicted RBP9.65□□□□□ -0.86
NUP88-213ENST00000576862 ADAMTSL4Q6UY14 1074 aa9.65□□□□□ -0.86
NUP88-213ENST00000576862 ASB16Q96NS5 453 aa9.65□□□□□ -0.86
NUP88-213ENST00000576862 RASSF4Q9H2L5 321 aa9.65□□□□□ -0.86
NUP88-213ENST00000576862 AMOTL2Q9Y2J4 779 aa9.65□□□□□ -0.86
NUP88-213ENST00000576862 NFKBIEO00221 500 aa9.64□□□□□ -0.87
NUP88-213ENST00000576862 TREHO43280 583 aa9.64□□□□□ -0.87
NUP88-213ENST00000576862 IRS1P35568 1242 aa9.64□□□□□ -0.87
NUP88-213ENST00000576862 KCNMA1Q12791 1236 aa9.64□□□□□ -0.87
NUP88-213ENST00000576862 SPACA7Q96KW9 195 aa9.64□□□□□ -0.87
NUP88-213ENST00000576862 PLVAPQ9BX97 442 aa9.64□□□□□ -0.87
NUP88-213ENST00000576862 RBSNQ9H1K0 784 aa9.64□□□□□ -0.87
NUP88-213ENST00000576862 EIF1AYO14602 144 aaKnown RBP9.63□□□□□ -0.87
NUP88-213ENST00000576862 TRPA1O75762 1119 aa9.63□□□□□ -0.87
NUP88-213ENST00000576862 COL8A1P27658 744 aa9.63□□□□□ -0.87
NUP88-213ENST00000576862 PEAR1Q5VY43 1037 aaPredicted RBP9.63□□□□□ -0.87
NUP88-213ENST00000576862 PBX4Q9BYU1 374 aa9.63□□□□□ -0.87
NUP88-213ENST00000576862 LATS2Q9NRM7 1088 aa9.63□□□□□ -0.87
NUP88-213ENST00000576862 DZANK1Q9NVP4 752 aa9.63□□□□□ -0.87
NUP88-213ENST00000576862 TRIM33Q9UPN9 1127 aa9.63□□□□□ -0.87
NUP88-213ENST00000576862 RNF225M0QZC1 329 aaPredicted RBP9.62□□□□□ -0.87
NUP88-213ENST00000576862 CPNE3O75131 537 aaKnown RBP9.62□□□□□ -0.87
NUP88-213ENST00000576862 NEFLP07196 543 aa9.62□□□□□ -0.87
NUP88-213ENST00000576862 BAG6P46379 1132 aa9.62□□□□□ -0.87
NUP88-213ENST00000576862 ZSCAN29Q8IWY8 852 aaPredicted RBP9.62□□□□□ -0.87
NUP88-213ENST00000576862 GALNT12Q8IXK2 581 aa9.62□□□□□ -0.87
NUP88-213ENST00000576862 HHIPQ96QV1 700 aa9.62□□□□□ -0.87
NUP88-213ENST00000576862 CSRNP1Q96S65 589 aa9.62□□□□□ -0.87
NUP88-213ENST00000576862 PIK3R2O00459 728 aa9.61□□□□□ -0.87
NUP88-213ENST00000576862 EDN3P14138 238 aa9.61□□□□□ -0.87
NUP88-213ENST00000576862 CEP135Q66GS9 1140 aa9.61□□□□□ -0.87
NUP88-213ENST00000576862 MSL1Q68DK7 614 aa9.61□□□□□ -0.87
NUP88-213ENST00000576862 ZKSCAN3Q9BRR0 538 aa9.61□□□□□ -0.87
NUP88-213ENST00000576862 DNAJC25Q9H1X3 360 aa9.61□□□□□ -0.87
NUP88-213ENST00000576862 PLCB3Q01970 1234 aa9.6□□□□□ -0.87
NUP88-213ENST00000576862 FMR1Q06787 632 aaKnown RBP eCLIP9.6□□□□□ -0.87
NUP88-213ENST00000576862 GDF6Q6KF10 455 aaPredicted RBP9.6□□□□□ -0.87
NUP88-213ENST00000576862 DNAJC14Q6Y2X3 702 aaPredicted RBP9.6□□□□□ -0.87
NUP88-213ENST00000576862 POP1Q99575 1024 aaKnown RBP9.6□□□□□ -0.87
NUP88-213ENST00000576862 OSMRQ99650 979 aa9.6□□□□□ -0.87
NUP88-213ENST00000576862 ZBTB7CA1YPR0 619 aa9.59□□□□□ -0.87
NUP88-213ENST00000576862 SMNDC1O75940 238 aaKnown RBP eCLIP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms