RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 AK9Q5TCS8 1911 aa23.12■■□□□ 1.29
CLN3-233ENST00000568452 TIMM10P62072 90 aa23.11■■□□□ 1.29
CLN3-233ENST00000568452 DEFB132Q7Z7B7 95 aa23.11■■□□□ 1.29
CLN3-233ENST00000568452 UPF1Q92900 1129 aaKnown RBP eCLIP23.11■■□□□ 1.29
CLN3-233ENST00000568452 BOLA2Q9H3K6 86 aa23.11■■□□□ 1.29
CLN3-233ENST00000568452 RBM25P49756 843 aaKnown RBP23.11■■□□□ 1.29
CLN3-233ENST00000568452 ATP2B3Q16720 1220 aa23.11■■□□□ 1.29
CLN3-233ENST00000568452 ESYT1Q9BSJ8 1104 aa23.11■■□□□ 1.29
CLN3-233ENST00000568452 SEC31BQ9NQW1 1179 aa23.11■■□□□ 1.29
CLN3-233ENST00000568452 HIP1O00291 1037 aa23.1■■□□□ 1.29
CLN3-233ENST00000568452 ZNF827Q17R98 1081 aa23.1■■□□□ 1.29
CLN3-233ENST00000568452 PDE8BO95263 885 aa23.09■■□□□ 1.29
CLN3-233ENST00000568452 CCDC158Q5M9N0 1113 aa23.09■■□□□ 1.29
CLN3-233ENST00000568452 GORABQ5T7V8 394 aa23.09■■□□□ 1.29
CLN3-233ENST00000568452 VGLL2Q8N8G2 317 aa23.09■■□□□ 1.29
CLN3-233ENST00000568452 CNBD1Q8NA66 436 aa23.09■■□□□ 1.29
CLN3-233ENST00000568452 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.09■■□□□ 1.29
CLN3-233ENST00000568452 ANKRD18AQ8IVF6 992 aa23.08■■□□□ 1.29
CLN3-233ENST00000568452 HAUS7Q99871 368 aa23.08■■□□□ 1.29
CLN3-233ENST00000568452 TM4SF1P30408 202 aa23.08■■□□□ 1.28
CLN3-233ENST00000568452 XAGE2Q96GT9 111 aa23.08■■□□□ 1.28
CLN3-233ENST00000568452 PUM3Q15397 648 aaKnown RBP23.07■■□□□ 1.28
CLN3-233ENST00000568452 C3orf67Q6ZVT6 689 aa23.07■■□□□ 1.28
CLN3-233ENST00000568452 RUFY2Q8WXA3 655 aa23.07■■□□□ 1.28
CLN3-233ENST00000568452 DIAPH3Q9NSV4 1193 aa23.07■■□□□ 1.28
CLN3-233ENST00000568452 EPB41L2O43491 1005 aaKnown RBP23.06■■□□□ 1.28
CLN3-233ENST00000568452 TICAM2Q86XR7 235 aa23.06■■□□□ 1.28
CLN3-233ENST00000568452 NLGN1Q8N2Q7 840 aa23.06■■□□□ 1.28
CLN3-233ENST00000568452 USP26Q9BXU7 913 aa23.06■■□□□ 1.28
CLN3-233ENST00000568452 SERPINB2P05120 415 aa23.05■■□□□ 1.28
CLN3-233ENST00000568452 ST5P78524 1137 aa23.05■■□□□ 1.28
CLN3-233ENST00000568452 TTC39AQ5SRH9 613 aa23.05■■□□□ 1.28
CLN3-233ENST00000568452 LPIN2Q92539 896 aa23.05■■□□□ 1.28
CLN3-233ENST00000568452 RFX7Q2KHR2 1363 aa23.05■■□□□ 1.28
CLN3-233ENST00000568452 IFIT1P09914 478 aaKnown RBP23.04■■□□□ 1.28
CLN3-233ENST00000568452 COL23A1Q86Y22 540 aaPredicted RBP23.04■■□□□ 1.28
CLN3-233ENST00000568452 FSD1Q9BTV5 496 aa23.04■■□□□ 1.28
CLN3-233ENST00000568452 BSDC1Q9NW68 430 aaPredicted RBP23.04■■□□□ 1.28
CLN3-233ENST00000568452 MSH5O43196 834 aa23.04■■□□□ 1.28
CLN3-233ENST00000568452 SLC5A1P13866 664 aa23.04■■□□□ 1.28
CLN3-233ENST00000568452 PRR5LQ6MZQ0 368 aa23.04■■□□□ 1.28
CLN3-233ENST00000568452 CASZ1Q86V15 1759 aa23.03■■□□□ 1.28
CLN3-233ENST00000568452 FGFR2P21802 821 aa23.03■■□□□ 1.28
CLN3-233ENST00000568452 ADORA1P30542 326 aa23.03■■□□□ 1.28
CLN3-233ENST00000568452 DDX46Q7L014 1031 aaKnown RBP23.03■■□□□ 1.28
CLN3-233ENST00000568452 DNAJC2Q99543 621 aaKnown RBP23.03■■□□□ 1.28
CLN3-233ENST00000568452 SGSM2O43147 1006 aa23.02■■□□□ 1.28
CLN3-233ENST00000568452 ZNF512BQ96KM6 892 aaPredicted RBP23.02■■□□□ 1.28
CLN3-233ENST00000568452 RPS8P62241 208 aaKnown RBP23.01■■□□□ 1.27
CLN3-233ENST00000568452 CHRNDQ07001 517 aa23.01■■□□□ 1.27
CLN3-233ENST00000568452 SPEF2Q9C093 1822 aa23.01■■□□□ 1.27
CLN3-233ENST00000568452 RAD50Q92878 1312 aa23.01■■□□□ 1.27
CLN3-233ENST00000568452 POLRMTO00411 1230 aaKnown RBP23■■□□□ 1.27
CLN3-233ENST00000568452 BECN1Q14457 450 aa23■■□□□ 1.27
CLN3-233ENST00000568452 CWC27Q6UX04 472 aaKnown RBP23■■□□□ 1.27
CLN3-233ENST00000568452 CCDC24Q8N4L8 307 aa23■■□□□ 1.27
CLN3-233ENST00000568452 HELBQ8NG08 1087 aaPredicted RBP23■■□□□ 1.27
CLN3-233ENST00000568452 PAG1Q9NWQ8 432 aa23■■□□□ 1.27
CLN3-233ENST00000568452 STK32BQ9NY57 414 aa23■■□□□ 1.27
CLN3-233ENST00000568452 PNPLA7Q6ZV29 1317 aa23■■□□□ 1.27
CLN3-233ENST00000568452 MCCP23508 829 aa23■■□□□ 1.27
CLN3-233ENST00000568452 DDR1Q08345 913 aa23■■□□□ 1.27
CLN3-233ENST00000568452 KBTBD3Q8NAB2 608 aa23■■□□□ 1.27
CLN3-233ENST00000568452 ANO2Q9NQ90 1003 aa23■■□□□ 1.27
CLN3-233ENST00000568452 DAXXQ9UER7 740 aaPredicted RBP23■■□□□ 1.27
CLN3-233ENST00000568452 UQCRFS1P1P0C7P4 283 aa22.99■■□□□ 1.27
CLN3-233ENST00000568452 KIAA1211Q6ZU35 1233 aa22.99■■□□□ 1.27
CLN3-233ENST00000568452 CELF1Q92879 486 aaKnown RBP22.99■■□□□ 1.27
CLN3-233ENST00000568452 ARAP2Q8WZ64 1704 aa22.99■■□□□ 1.27
CLN3-233ENST00000568452 TNRC6CQ9HCJ0 1690 aaKnown RBP22.98■■□□□ 1.27
CLN3-233ENST00000568452 SLC15A2Q16348 729 aa22.98■■□□□ 1.27
CLN3-233ENST00000568452 GOLIM4O00461 696 aa22.97■■□□□ 1.27
CLN3-233ENST00000568452 TAF5LO75529 589 aa22.97■■□□□ 1.27
CLN3-233ENST00000568452 LRRFIP1Q32MZ4 808 aaKnown RBP22.97■■□□□ 1.27
CLN3-233ENST00000568452 EDC3Q96F86 508 aaKnown RBP22.97■■□□□ 1.27
CLN3-233ENST00000568452 UBE4AQ14139 1066 aa22.97■■□□□ 1.27
CLN3-233ENST00000568452 RPGRQ92834 1020 aaKnown RBP22.97■■□□□ 1.27
CLN3-233ENST00000568452 ANKRD2Q9GZV1 360 aa22.97■■□□□ 1.27
CLN3-233ENST00000568452 MINPP1Q9UNW1 487 aa22.97■■□□□ 1.27
CLN3-233ENST00000568452 ARID4AP29374 1257 aaPredicted RBP22.96■■□□□ 1.27
CLN3-233ENST00000568452 NMIQ13287 307 aaPredicted RBP22.96■■□□□ 1.27
CLN3-233ENST00000568452 GRAPQ13588 217 aa22.96■■□□□ 1.27
CLN3-233ENST00000568452 CCDC102BQ68D86 513 aa22.96■■□□□ 1.27
CLN3-233ENST00000568452 GRAPLQ8TC17 118 aaPredicted RBP22.96■■□□□ 1.27
CLN3-233ENST00000568452 ANO8Q9HCE9 1232 aaPredicted RBP22.96■■□□□ 1.27
CLN3-233ENST00000568452 CRY2Q49AN0 593 aa22.95■■□□□ 1.26
CLN3-233ENST00000568452 SNRKQ9NRH2 765 aa22.95■■□□□ 1.26
CLN3-233ENST00000568452 NDUFB9Q9Y6M9 179 aa22.95■■□□□ 1.26
CLN3-233ENST00000568452 COL4A1P02462 1669 aa22.95■■□□□ 1.26
CLN3-233ENST00000568452 FKBP4Q02790 459 aaKnown RBP eCLIP22.94■■□□□ 1.26
CLN3-233ENST00000568452 PARP3Q9Y6F1 533 aa22.94■■□□□ 1.26
CLN3-233ENST00000568452 QSER1Q2KHR3 1735 aa22.94■■□□□ 1.26
CLN3-233ENST00000568452 RBM17Q96I25 401 aaKnown RBP22.93■■□□□ 1.26
CLN3-233ENST00000568452 KIF2CQ99661 725 aa22.93■■□□□ 1.26
CLN3-233ENST00000568452 IL25Q9H293 177 aa22.93■■□□□ 1.26
CLN3-233ENST00000568452 KLRG2A4D1S0 409 aaPredicted RBP22.93■■□□□ 1.26
CLN3-233ENST00000568452 PHKA1P46020 1223 aa22.93■■□□□ 1.26
CLN3-233ENST00000568452 ANAPC15P60006 121 aa22.93■■□□□ 1.26
CLN3-233ENST00000568452 RABEP1Q15276 862 aa22.93■■□□□ 1.26
CLN3-233ENST00000568452 TTF1Q15361 905 aaPredicted RBP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms