RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 DBNDD1Q9H9R9 158 aa19.1■□□□□ 0.65
CLN3-222ENST00000566083 WBP1LQ9NX94 342 aa19.1■□□□□ 0.65
CLN3-222ENST00000566083 PSMD14O00487 310 aa19.09■□□□□ 0.65
CLN3-222ENST00000566083 ECE2O60344 883 aa19.09■□□□□ 0.65
CLN3-222ENST00000566083 SLC4A2P04920 1241 aa19.09■□□□□ 0.65
CLN3-222ENST00000566083 MICALL2Q8IY33 904 aa19.09■□□□□ 0.65
CLN3-222ENST00000566083 SEC31BQ9NQW1 1179 aa19.09■□□□□ 0.65
CLN3-222ENST00000566083 TLL2Q9Y6L7 1015 aa19.09■□□□□ 0.65
CLN3-222ENST00000566083 XDHP47989 1333 aa19.09■□□□□ 0.65
CLN3-222ENST00000566083 TRPM7Q96QT4 1865 aa19.09■□□□□ 0.65
CLN3-222ENST00000566083 UFL1O94874 794 aa19.08■□□□□ 0.65
CLN3-222ENST00000566083 CTSWP56202 376 aa19.08■□□□□ 0.65
CLN3-222ENST00000566083 HHIPL1Q96JK4 782 aa19.08■□□□□ 0.65
CLN3-222ENST00000566083 TRAF5O00463 557 aa19.08■□□□□ 0.64
CLN3-222ENST00000566083 ATP2B4P23634 1241 aa19.08■□□□□ 0.64
CLN3-222ENST00000566083 CST9Q5W186 159 aa19.08■□□□□ 0.64
CLN3-222ENST00000566083 PAXIP1Q6ZW49 1069 aaPredicted RBP19.08■□□□□ 0.64
CLN3-222ENST00000566083 BEGAINQ9BUH8 593 aa19.08■□□□□ 0.64
CLN3-222ENST00000566083 CACNA1FO60840 1977 aa19.07■□□□□ 0.64
CLN3-222ENST00000566083 FOXN1O15353 648 aa19.07■□□□□ 0.64
CLN3-222ENST00000566083 CELF2O95319 508 aaKnown RBP19.07■□□□□ 0.64
CLN3-222ENST00000566083 IGKV5-2P06315 115 aa19.07■□□□□ 0.64
CLN3-222ENST00000566083 HIRAP54198 1017 aaPredicted RBP19.07■□□□□ 0.64
CLN3-222ENST00000566083 CAPNS2Q96L46 248 aa19.07■□□□□ 0.64
CLN3-222ENST00000566083 MYH16Q9H6N6 1097 aa19.07■□□□□ 0.64
CLN3-222ENST00000566083 NEURL1BA8MQ27 555 aa19.06■□□□□ 0.64
CLN3-222ENST00000566083 VIL1P09327 827 aaKnown RBP19.06■□□□□ 0.64
CLN3-222ENST00000566083 MAP2K2P36507 400 aa19.06■□□□□ 0.64
CLN3-222ENST00000566083 DOK7Q18PE1 504 aa19.06■□□□□ 0.64
CLN3-222ENST00000566083 TTLL11Q8NHH1 800 aa19.06■□□□□ 0.64
CLN3-222ENST00000566083 TRPM4Q8TD43 1214 aa19.06■□□□□ 0.64
CLN3-222ENST00000566083 BSDC1Q9NW68 430 aaPredicted RBP19.06■□□□□ 0.64
CLN3-222ENST00000566083 ZBTB12Q9Y330 459 aaPredicted RBP19.06■□□□□ 0.64
CLN3-222ENST00000566083 RTL9Q8NET4 1388 aa19.06■□□□□ 0.64
CLN3-222ENST00000566083 FLIIQ13045 1269 aa19.05■□□□□ 0.64
CLN3-222ENST00000566083 PODNQ7Z5L7 613 aa19.05■□□□□ 0.64
CLN3-222ENST00000566083 SAPCD2Q86UD0 394 aa19.05■□□□□ 0.64
CLN3-222ENST00000566083 AGBL3Q8NEM8 1001 aa19.05■□□□□ 0.64
CLN3-222ENST00000566083 GPR101Q96P66 508 aaPredicted RBP19.05■□□□□ 0.64
CLN3-222ENST00000566083 GLIS2Q9BZE0 524 aaPredicted RBP19.05■□□□□ 0.64
CLN3-222ENST00000566083 FANCIQ9NVI1 1328 aa19.04■□□□□ 0.64
CLN3-222ENST00000566083 H7C1W4 665 aa19.04■□□□□ 0.64
CLN3-222ENST00000566083 FKBP5Q13451 457 aaPredicted RBP19.04■□□□□ 0.64
CLN3-222ENST00000566083 JARID2Q92833 1246 aaPredicted RBP19.04■□□□□ 0.64
CLN3-222ENST00000566083 DCPSQ96C86 337 aaKnown RBP19.04■□□□□ 0.64
CLN3-222ENST00000566083 CCDC85AQ96PX6 553 aaPredicted RBP19.04■□□□□ 0.64
CLN3-222ENST00000566083 PLA2G12BQ9BX93 195 aa19.04■□□□□ 0.64
CLN3-222ENST00000566083 FMR1Q06787 632 aaKnown RBP eCLIP19.03■□□□□ 0.64
CLN3-222ENST00000566083 CWF19L2Q2TBE0 894 aaKnown RBP19.03■□□□□ 0.64
CLN3-222ENST00000566083 LINS1Q8NG48 757 aa19.03■□□□□ 0.64
CLN3-222ENST00000566083 DNAAF4Q8WXU2 420 aa19.03■□□□□ 0.64
CLN3-222ENST00000566083 IGHMBP2P38935 993 aaKnown RBP19.02■□□□□ 0.64
CLN3-222ENST00000566083 GCKRQ14397 625 aa19.02■□□□□ 0.64
CLN3-222ENST00000566083 SAMD7Q7Z3H4 446 aa19.02■□□□□ 0.64
CLN3-222ENST00000566083 UBE3BQ7Z3V4 1068 aa19.02■□□□□ 0.64
CLN3-222ENST00000566083 ZNF609O15014 1411 aa19.02■□□□□ 0.64
CLN3-222ENST00000566083 VAMP4O75379 141 aa19.01■□□□□ 0.63
CLN3-222ENST00000566083 TBC1D10BQ4KMP7 808 aaPredicted RBP19.01■□□□□ 0.63
CLN3-222ENST00000566083 CYP4F22Q6NT55 531 aa19.01■□□□□ 0.63
CLN3-222ENST00000566083 G2E3Q7L622 706 aa19.01■□□□□ 0.63
CLN3-222ENST00000566083 KRT26Q7Z3Y9 468 aa19.01■□□□□ 0.63
CLN3-222ENST00000566083 GREM2Q9H772 168 aa19.01■□□□□ 0.63
CLN3-222ENST00000566083 MYH3P11055 1940 aa19.01■□□□□ 0.63
CLN3-222ENST00000566083 CA12O43570 354 aa19■□□□□ 0.63
CLN3-222ENST00000566083 MMP14P50281 582 aa19■□□□□ 0.63
CLN3-222ENST00000566083 KIF4BQ2VIQ3 1234 aa19■□□□□ 0.63
CLN3-222ENST00000566083 RSBN1LQ6PCB5 846 aaPredicted RBP19■□□□□ 0.63
CLN3-222ENST00000566083 USP48Q86UV5 1035 aa19■□□□□ 0.63
CLN3-222ENST00000566083 ANKRD2Q9GZV1 360 aa19■□□□□ 0.63
CLN3-222ENST00000566083 ZNF408Q9H9D4 720 aa19■□□□□ 0.63
CLN3-222ENST00000566083 KCNQ5Q9NR82 932 aa19■□□□□ 0.63
CLN3-222ENST00000566083 MINPP1Q9UNW1 487 aa19■□□□□ 0.63
CLN3-222ENST00000566083 MED23Q9ULK4 1368 aa19■□□□□ 0.63
CLN3-222ENST00000566083 SHTN1A0MZ66 631 aa19■□□□□ 0.63
CLN3-222ENST00000566083 USP17L3A6NCW0 530 aa19■□□□□ 0.63
CLN3-222ENST00000566083 USP17L4A6NCW7 530 aa19■□□□□ 0.63
CLN3-222ENST00000566083 LBX1P52954 281 aa19■□□□□ 0.63
CLN3-222ENST00000566083 GRM1Q13255 1194 aa19■□□□□ 0.63
CLN3-222ENST00000566083 USP17L1Q7RTZ2 530 aa19■□□□□ 0.63
CLN3-222ENST00000566083 SULF1Q8IWU6 871 aa19■□□□□ 0.63
CLN3-222ENST00000566083 MPHOSPH8Q99549 860 aa19■□□□□ 0.63
CLN3-222ENST00000566083 LEMD3Q9Y2U8 911 aa19■□□□□ 0.63
CLN3-222ENST00000566083 COL4A1P02462 1669 aa19■□□□□ 0.63
CLN3-222ENST00000566083 CCT4P50991 539 aaKnown RBP18.99■□□□□ 0.63
CLN3-222ENST00000566083 ZNF280AP59817 542 aaPredicted RBP18.99■□□□□ 0.63
CLN3-222ENST00000566083 RBM26Q5T8P6 1007 aaKnown RBP18.99■□□□□ 0.63
CLN3-222ENST00000566083 C2orf69Q8N8R5 385 aa18.99■□□□□ 0.63
CLN3-222ENST00000566083 SALL2Q9Y467 1007 aaPredicted RBP18.99■□□□□ 0.63
CLN3-222ENST00000566083 CAPN15O75808 1086 aa18.98■□□□□ 0.63
CLN3-222ENST00000566083 USP17L8P0C7I0 530 aa18.98■□□□□ 0.63
CLN3-222ENST00000566083 EXOSC9Q06265 439 aaKnown RBP18.98■□□□□ 0.63
CLN3-222ENST00000566083 COA1Q9GZY4 146 aa18.98■□□□□ 0.63
CLN3-222ENST00000566083 CSF1RP07333 972 aa18.97■□□□□ 0.63
CLN3-222ENST00000566083 HSPA8P11142 646 aaKnown RBP18.97■□□□□ 0.63
CLN3-222ENST00000566083 ITGA6P23229 1130 aa18.97■□□□□ 0.63
CLN3-222ENST00000566083 NOGQ13253 232 aa18.97■□□□□ 0.63
CLN3-222ENST00000566083 MYO3BQ8WXR4 1341 aa18.97■□□□□ 0.63
CLN3-222ENST00000566083 SCN9AQ15858 1988 aa18.96■□□□□ 0.63
CLN3-222ENST00000566083 THSD7BQ9C0I4 1608 aa18.96■□□□□ 0.63
CLN3-222ENST00000566083 BRPF1P55201 1214 aaPredicted RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms