RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 IQGAP2Q13576 1575 aa6.77□□□□□ -1.32
VPS35P1-201ENST00000563400 CHD1O14646 1710 aa6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 BMP1P13497 986 aa6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 EIF1AXP47813 144 aaKnown RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 PTPN12Q05209 780 aaKnown RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 PPP1R26Q5T8A7 1209 aaPredicted RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 NBPF6Q5VWK0 638 aa6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 WDR75Q8IWA0 830 aaKnown RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 SH3TC2Q8TF17 1288 aa6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 NBPF4Q96M43 638 aa6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 NAP1L5Q96NT1 182 aaPredicted RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 KLF16Q9BXK1 252 aaPredicted RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 SLKQ9H2G2 1235 aaPredicted RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 TYW1Q9NV66 732 aaKnown RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 GEMIN8Q9NWZ8 242 aaKnown RBP6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 AK5Q9Y6K8 562 aa6.77□□□□□ -1.33
VPS35P1-201ENST00000563400 KIF4AO95239 1232 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 HCLS1P14317 486 aaPredicted RBP6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 HS2ST1Q7LGA3 356 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 SEPT12Q8IYM1 358 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 GPRASP2Q96D09 838 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 IL17RAQ96F46 866 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 TSEN34Q9BSV6 310 aaKnown RBP6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 ZFAND3Q9H8U3 227 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 ESYT3A0FGR9 886 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 CCDC85CA6NKD9 419 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 ETFBP38117 255 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 RASA3Q14644 834 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 INTS6LQ5JSJ4 861 aaKnown RBP6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 RNF20Q5VTR2 975 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 ALG1LQ6GMV1 187 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 KRBA2Q6ZNG9 492 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 TRIM46Q7Z4K8 759 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 PNISRQ8TF01 805 aaKnown RBP6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 COL26A1Q96A83 441 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 ALKBH8Q96BT7 664 aaKnown RBP6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 SLC39A13Q96H72 371 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 ZFP42Q96MM3 310 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 MRVI1Q9Y6F6 885 aa6.76□□□□□ -1.33
VPS35P1-201ENST00000563400 SSBP05455 408 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 BMP2P12643 396 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 GNALP38405 381 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 MASP1P48740 699 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 ANKS3Q6ZW76 656 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 CNPY4Q8N129 248 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 LILRB2Q8N423 598 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 ZNF775Q96BV0 537 aaPredicted RBP6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 DEPDC7Q96QD5 511 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 HOMER2Q9NSB8 354 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 BSDC1Q9NW68 430 aaPredicted RBP6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 SIRPGQ9P1W8 387 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 EFCAB5A4FU69 1503 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 RUSC2Q8N2Y8 1516 aa6.75□□□□□ -1.33
VPS35P1-201ENST00000563400 LDHAP00338 332 aaKnown RBP6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 SNRPBP14678 240 aaKnown RBP6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 RAB15P59190 212 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 JAMLQ86YT9 394 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 MEIOBQ8N635 442 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 MPHOSPH6Q99547 160 aaKnown RBP6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 MTA3Q9BTC8 594 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 CHST12Q9NRB3 414 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 CNTN3Q9P232 1028 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 COMMD10Q9Y6G5 202 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 ARHGEF11O15085 1522 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 CLASP1Q7Z460 1538 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 UGGT2Q9NYU1 1516 aa6.74□□□□□ -1.33
VPS35P1-201ENST00000563400 VIL1P09327 827 aaKnown RBP6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 CDKN1CP49918 316 aaPredicted RBP6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 SYCP2LQ5T4T6 812 aa6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 C6orf118Q5T5N4 469 aa6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 KIAA0907Q7Z7F0 614 aaPredicted RBP6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 LINC00528Q8N1L1 170 aa6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 APPBP2Q92624 585 aa6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 CEP89Q96ST8 783 aa6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 FAM126AQ9BYI3 521 aaPredicted RBP6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 COPRSQ9NQ92 184 aa6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 SFMBT1Q9UHJ3 866 aa6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 UACAQ9BZF9 1416 aa6.73□□□□□ -1.33
VPS35P1-201ENST00000563400 ESPNB1AK53 854 aa6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 KLF4O43474 513 aa6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 BDNFP23560 247 aa6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 ZEB1P37275 1124 aaPredicted RBP6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 DHX8Q14562 1220 aaKnown RBP6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 HNRNPLLQ8WVV9 542 aaKnown RBP6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 SCYL1Q96KG9 808 aa6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 TRIM55Q9BYV6 548 aa6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 ESF1Q9H501 851 aaKnown RBP6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 QTRT2Q9H974 415 aaKnown RBP6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 CEP170Q5SW79 1584 aa6.72□□□□□ -1.33
VPS35P1-201ENST00000563400 MAN1A2O60476 641 aa6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 RAB33AQ14088 237 aa6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 SAFB2Q14151 953 aaKnown RBP eCLIP6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 TKFCQ3LXA3 575 aa6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 BRDTQ58F21 947 aaPredicted RBP6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 MEI1Q5TIA1 1274 aa6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 ATCAYQ86WG3 371 aa6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 DNAJC7Q99615 494 aa6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 APBA2Q99767 749 aa6.71□□□□□ -1.33
VPS35P1-201ENST00000563400 CTTNBP2Q8WZ74 1663 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms