RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 BTG4Q9NY30 223 aa21.79■■□□□ 1.08
RAB40C-206ENST00000561781 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.79■■□□□ 1.08
RAB40C-206ENST00000561781 LMAN1P49257 510 aa21.78■■□□□ 1.08
RAB40C-206ENST00000561781 CAMK4Q16566 473 aa21.78■■□□□ 1.08
RAB40C-206ENST00000561781 ANO6Q4KMQ2 910 aa21.78■■□□□ 1.08
RAB40C-206ENST00000561781 NGLY1Q96IV0 654 aa21.78■■□□□ 1.08
RAB40C-206ENST00000561781 STRN4Q9NRL3 753 aa21.78■■□□□ 1.08
RAB40C-206ENST00000561781 ORC3Q9UBD5 711 aaPredicted RBP21.78■■□□□ 1.08
RAB40C-206ENST00000561781 SUFUQ9UMX1 484 aa21.78■■□□□ 1.08
RAB40C-206ENST00000561781 MAP2P11137 1827 aaKnown RBP21.78■■□□□ 1.08
RAB40C-206ENST00000561781 MEIS3Q99687 375 aa21.78■■□□□ 1.08
RAB40C-206ENST00000561781 HSP90B1P14625 803 aaKnown RBP21.77■■□□□ 1.08
RAB40C-206ENST00000561781 ATP6V1AP38606 617 aa21.77■■□□□ 1.08
RAB40C-206ENST00000561781 HSP90AB3PQ58FF7 597 aa21.77■■□□□ 1.08
RAB40C-206ENST00000561781 ZCCHC17Q9NP64 241 aaKnown RBP21.77■■□□□ 1.08
RAB40C-206ENST00000561781 TDO2P48775 406 aa21.77■■□□□ 1.08
RAB40C-206ENST00000561781 SNW1Q13573 536 aaKnown RBP21.77■■□□□ 1.08
RAB40C-206ENST00000561781 RILPL2Q969X0 211 aa21.77■■□□□ 1.08
RAB40C-206ENST00000561781 LARP6Q9BRS8 491 aaKnown RBP21.77■■□□□ 1.08
RAB40C-206ENST00000561781 ADAM21Q9UKJ8 722 aa21.77■■□□□ 1.08
RAB40C-206ENST00000561781 EIF3CLB5ME19 914 aaKnown RBP21.76■■□□□ 1.07
RAB40C-206ENST00000561781 HOXC9P31274 260 aa21.76■■□□□ 1.07
RAB40C-206ENST00000561781 MMS22LQ6ZRQ5 1243 aa21.76■■□□□ 1.07
RAB40C-206ENST00000561781 EIF3CQ99613 913 aaKnown RBP21.76■■□□□ 1.07
RAB40C-206ENST00000561781 TRMT1Q9NXH9 659 aaKnown RBP21.76■■□□□ 1.07
RAB40C-206ENST00000561781 CHMP3Q9Y3E7 222 aa21.76■■□□□ 1.07
RAB40C-206ENST00000561781 CAVIN2O95810 425 aa21.76■■□□□ 1.07
RAB40C-206ENST00000561781 MRFAP1L1Q96HT8 127 aa21.76■■□□□ 1.07
RAB40C-206ENST00000561781 CAMTA1Q9Y6Y1 1673 aa21.76■■□□□ 1.07
RAB40C-206ENST00000561781 HMOX1P09601 288 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 SMC3Q9UQE7 1217 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 TUBGCP6Q96RT7 1819 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 RGPD5Q99666 1765 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 RPS6KA5O75582 802 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 CPP00450 1065 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 MAP2K2P36507 400 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 RPAINQ86UA6 219 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 ANKRD20A12PQ8NF67 263 aa21.75■■□□□ 1.07
RAB40C-206ENST00000561781 CPDO75976 1380 aa21.74■■□□□ 1.07
RAB40C-206ENST00000561781 EP400Q96L91 3159 aa21.74■■□□□ 1.07
RAB40C-206ENST00000561781 SARM1Q6SZW1 724 aa21.74■■□□□ 1.07
RAB40C-206ENST00000561781 CKAP2LQ8IYA6 745 aa21.74■■□□□ 1.07
RAB40C-206ENST00000561781 CCDC196A0A1B0GTZ2 297 aa21.74■■□□□ 1.07
RAB40C-206ENST00000561781 TBC1D8O95759 1140 aa21.74■■□□□ 1.07
RAB40C-206ENST00000561781 CCZ1BP86790 482 aa21.74■■□□□ 1.07
RAB40C-206ENST00000561781 CCZ1P86791 482 aaPredicted RBP21.74■■□□□ 1.07
RAB40C-206ENST00000561781 E2F4Q16254 413 aa21.74■■□□□ 1.07
RAB40C-206ENST00000561781 CCDC69A6NI79 296 aa21.73■■□□□ 1.07
RAB40C-206ENST00000561781 HSPA4P34932 840 aa21.73■■□□□ 1.07
RAB40C-206ENST00000561781 CORO7P57737 925 aa21.73■■□□□ 1.07
RAB40C-206ENST00000561781 CCDC158Q5M9N0 1113 aa21.73■■□□□ 1.07
RAB40C-206ENST00000561781 SRRTQ9BXP5 876 aaKnown RBP21.73■■□□□ 1.07
RAB40C-206ENST00000561781 IL25Q9H293 177 aa21.73■■□□□ 1.07
RAB40C-206ENST00000561781 AFF2P51816 1311 aa21.73■■□□□ 1.07
RAB40C-206ENST00000561781 SALL3Q9BXA9 1300 aa21.73■■□□□ 1.07
RAB40C-206ENST00000561781 DTNBO60941 627 aa21.72■■□□□ 1.07
RAB40C-206ENST00000561781 HMMRO75330 724 aa21.72■■□□□ 1.07
RAB40C-206ENST00000561781 TNMDQ9H2S6 317 aa21.72■■□□□ 1.07
RAB40C-206ENST00000561781 LIG1P18858 919 aa21.72■■□□□ 1.07
RAB40C-206ENST00000561781 ZNF165P49910 485 aa21.72■■□□□ 1.07
RAB40C-206ENST00000561781 AK2P54819 239 aa21.72■■□□□ 1.07
RAB40C-206ENST00000561781 USHBP1Q8N6Y0 703 aa21.72■■□□□ 1.07
RAB40C-206ENST00000561781 MTMR6Q9Y217 621 aa21.72■■□□□ 1.07
RAB40C-206ENST00000561781 ARID5BQ14865 1188 aa21.71■■□□□ 1.07
RAB40C-206ENST00000561781 RUFY3Q7L099 469 aa21.71■■□□□ 1.07
RAB40C-206ENST00000561781 LRRN4CLQ8ND94 238 aa21.71■■□□□ 1.07
RAB40C-206ENST00000561781 TTC14Q96N46 770 aa21.71■■□□□ 1.07
RAB40C-206ENST00000561781 MKRN1Q9UHC7 482 aaKnown RBP21.71■■□□□ 1.07
RAB40C-206ENST00000561781 LARP1Q6PKG0 1096 aaKnown RBP21.71■■□□□ 1.07
RAB40C-206ENST00000561781 PLCH1Q4KWH8 1693 aa21.71■■□□□ 1.07
RAB40C-206ENST00000561781 COL18A1P39060 1754 aa21.7■■□□□ 1.07
RAB40C-206ENST00000561781 SASH3O75995 380 aa21.7■■□□□ 1.06
RAB40C-206ENST00000561781 IP6K1Q92551 441 aa21.7■■□□□ 1.06
RAB40C-206ENST00000561781 LIMCH1Q9UPQ0 1083 aa21.7■■□□□ 1.06
RAB40C-206ENST00000561781 FLT4P35916 1363 aa21.7■■□□□ 1.06
RAB40C-206ENST00000561781 LMO7Q8WWI1 1683 aa21.7■■□□□ 1.06
RAB40C-206ENST00000561781 SEC31AO94979 1220 aaKnown RBP21.7■■□□□ 1.06
RAB40C-206ENST00000561781 TRDNQ13061 729 aa21.7■■□□□ 1.06
RAB40C-206ENST00000561781 ZRSR1Q15695 479 aaKnown RBP21.7■■□□□ 1.06
RAB40C-206ENST00000561781 NBPF20Q3BBV1 942 aa21.7■■□□□ 1.06
RAB40C-206ENST00000561781 ZSCAN16Q9H4T2 348 aaPredicted RBP21.7■■□□□ 1.06
RAB40C-206ENST00000561781 GJB2P29033 226 aa21.69■■□□□ 1.06
RAB40C-206ENST00000561781 CC2D1AQ6P1N0 951 aaPredicted RBP21.69■■□□□ 1.06
RAB40C-206ENST00000561781 RBM43Q6ZSC3 357 aaKnown RBP21.69■■□□□ 1.06
RAB40C-206ENST00000561781 TTC6Q86TZ1 520 aa21.69■■□□□ 1.06
RAB40C-206ENST00000561781 UNC5CLQ8IV45 518 aa21.69■■□□□ 1.06
RAB40C-206ENST00000561781 EFCAB13Q8IY85 973 aa21.69■■□□□ 1.06
RAB40C-206ENST00000561781 ANKRD24Q8TF21 1146 aa21.69■■□□□ 1.06
RAB40C-206ENST00000561781 BCL9LQ86UU0 1499 aa21.69■■□□□ 1.06
RAB40C-206ENST00000561781 EFCAB8A8MWE9 144 aa21.69■■□□□ 1.06
RAB40C-206ENST00000561781 GSDMDP57764 484 aa21.69■■□□□ 1.06
RAB40C-206ENST00000561781 COL5A2P05997 1499 aaPredicted RBP21.69■■□□□ 1.06
RAB40C-206ENST00000561781 GOLGA6L19H0YKK7 550 aa21.68■■□□□ 1.06
RAB40C-206ENST00000561781 CSB-PGBD3P0DP91 1061 aa21.68■■□□□ 1.06
RAB40C-206ENST00000561781 CNKSR2Q8WXI2 1034 aa21.68■■□□□ 1.06
RAB40C-206ENST00000561781 DDX19AQ9NUU7 478 aaKnown RBP21.68■■□□□ 1.06
RAB40C-206ENST00000561781 RAI14Q9P0K7 980 aa21.68■■□□□ 1.06
RAB40C-206ENST00000561781 USP21Q9UK80 565 aa21.68■■□□□ 1.06
RAB40C-206ENST00000561781 EIF4A2Q14240 407 aaKnown RBP21.68■■□□□ 1.06
RAB40C-206ENST00000561781 DACT1Q9NYF0 836 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms