RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 DNAJC5BQ9UF47 199 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 PUF60Q9UHX1 559 aaKnown RBP15.03■□□□□ -0
CSPG4P11-201ENST00000560634 LAMC3Q9Y6N6 1575 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 NPHP3Q7Z494 1330 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 C6orf229H3BNL8 230 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 F13A1P00488 732 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 XRCC6P12956 609 aaKnown RBP eCLIP15.03■□□□□ -0
CSPG4P11-201ENST00000560634 ALDH1L1O75891 902 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 SYT1P21579 422 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 RTN1Q16799 776 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 GPATCH11Q8N954 259 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 SAMM50Q9Y512 469 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 RBM8AQ9Y5S9 174 aaKnown RBP15.03■□□□□ -0
CSPG4P11-201ENST00000560634 NCOA1Q15788 1441 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 DDX46Q7L014 1031 aaKnown RBP15.03■□□□□ -0
CSPG4P11-201ENST00000560634 ZHX1Q9UKY1 873 aaPredicted RBP15.03■□□□□ -0
CSPG4P11-201ENST00000560634 NECAB1Q8N987 351 aa15.02■□□□□ -0
CSPG4P11-201ENST00000560634 ANKRD13DQ6ZTN6 518 aa15.02■□□□□ -0
CSPG4P11-201ENST00000560634 RSPH14Q9UHP6 348 aa15.02■□□□□ -0
CSPG4P11-201ENST00000560634 CNPY2Q9Y2B0 182 aa15.02■□□□□ -0
CSPG4P11-201ENST00000560634 EBAG9O00559 213 aa15.02□□□□□ -0.01
CSPG4P11-201ENST00000560634 GPTP24298 496 aa15.02□□□□□ -0.01
CSPG4P11-201ENST00000560634 MCMDC2Q4G0Z9 681 aa15.02□□□□□ -0.01
CSPG4P11-201ENST00000560634 WDR78Q5VTH9 848 aa15.02□□□□□ -0.01
CSPG4P11-201ENST00000560634 MPHOSPH6Q99547 160 aaKnown RBP15.02□□□□□ -0.01
CSPG4P11-201ENST00000560634 STX8Q9UNK0 236 aa15.02□□□□□ -0.01
CSPG4P11-201ENST00000560634 TRIM75PA6NK02 468 aa15.02□□□□□ -0.01
CSPG4P11-201ENST00000560634 AFMP43652 599 aa15.02□□□□□ -0.01
CSPG4P11-201ENST00000560634 EXOC5O00471 708 aa15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 AOPEPQ8N6M6 819 aa15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 ZMYND15Q9H091 742 aa15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 CALML3P27482 149 aa15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 CCDC42Q96M95 316 aa15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 EPRSP07814 1512 aaKnown RBP15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 SPTLC2O15270 562 aa15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 ABCA10Q8WWZ4 1543 aa15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 ANKRD36BQ8N2N9 1353 aa15.01□□□□□ -0.01
CSPG4P11-201ENST00000560634 ZGPATQ8N5A5 531 aaKnown RBP15□□□□□ -0.01
CSPG4P11-201ENST00000560634 SMC6Q96SB8 1091 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 SSX2IPQ9Y2D8 614 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 SCAF11Q99590 1463 aaKnown RBP15□□□□□ -0.01
CSPG4P11-201ENST00000560634 CHMP4BP1P59074 171 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 IFIT1BQ5T764 474 aaKnown RBP15□□□□□ -0.01
CSPG4P11-201ENST00000560634 DNAJC25Q9H1X3 360 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 RNF216Q9NWF9 866 aaPredicted RBP15□□□□□ -0.01
CSPG4P11-201ENST00000560634 KIAA0586Q9BVV6 1533 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 BICDL2A1A5D9 508 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 CALM1P0DP23 149 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 CALM2P0DP24 149 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 CALM3P0DP25 149 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 CAPN2P17655 700 aa15□□□□□ -0.01
CSPG4P11-201ENST00000560634 ATP5J2-PTCD1G3V325 749 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 IL15P40933 162 aaPredicted RBP14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 ATP8B2P98198 1209 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 CCDC129Q6ZRS4 1044 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 BICD1Q96G01 975 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 ASIC1P78348 528 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 TYRO3Q06418 890 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 FMNL3Q8IVF7 1028 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 INTS4Q96HW7 963 aaKnown RBP14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 SYNCQ9H7C4 482 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 VAV2P52735 878 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 MXRA7P84157 204 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 MSL1Q68DK7 614 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 CCDC121Q6ZUS5 278 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 ZNF830Q96NB3 372 aaPredicted RBP14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 ATP2C2O75185 946 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 CCDC152Q4G0S7 254 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 ATL3Q6DD88 541 aa14.99□□□□□ -0.01
CSPG4P11-201ENST00000560634 ATP2B3Q16720 1220 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 MMRN2Q9H8L6 949 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 V9GYY5 206 aaPredicted RBP14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 FOXO3O43524 673 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 RAB11FIP4Q86YS3 637 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 RTL1A6NKG5 1358 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 ZBTB16Q05516 673 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 TSHZ3Q63HK5 1081 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 OTUD6BQ8N6M0 293 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 CFAP57Q96MR6 1250 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 AMOTL2Q9Y2J4 779 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 TSPY3P0CV98 308 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 TSPY8P0CW00 308 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 GTF2A1P52655 376 aaPredicted RBP14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 DNM1Q05193 864 aaKnown RBP14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 SMC5Q8IY18 1101 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 UTP14AQ9BVJ6 771 aaKnown RBP14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 IMPG2Q9BZV3 1241 aa14.98□□□□□ -0.01
CSPG4P11-201ENST00000560634 TTC41PQ6P2S7 1318 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 LMOD1P29536 600 aaPredicted RBP14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 Q6ZUG5 572 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 MEIS3Q99687 375 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 BRAPQ7Z569 592 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 PHACTR2O75167 634 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 KIAA1524Q8TCG1 905 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 ADGRF5Q8IZF2 1346 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 CYP7A1P22680 504 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 KRT79Q5XKE5 535 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 NBPF11Q86T75 865 aa14.97□□□□□ -0.01
CSPG4P11-201ENST00000560634 C6orf50Q9HD87 102 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms