RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 KIF3AQ9Y496 699 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 ATP5J2-PTCD1G3V325 749 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 PTCD1O75127 700 aaKnown RBP13.34□□□□□ -0.27
CUX1-218ENST00000560541 GCKRQ14397 625 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 TMED8Q6PL24 325 aaPredicted RBP13.34□□□□□ -0.27
CUX1-218ENST00000560541 DDX46Q7L014 1031 aaKnown RBP13.34□□□□□ -0.27
CUX1-218ENST00000560541 CCDC186Q7Z3E2 898 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 NFATC2IPQ8NCF5 419 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 BRF1Q92994 677 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 PGBD1Q96JS3 809 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 ZNF790Q6PG37 636 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 Q6ZUG5 572 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 TRIM5Q9C035 493 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 SCAND2PQ9GZW5 306 aaPredicted RBP13.34□□□□□ -0.27
CUX1-218ENST00000560541 DNAJC25Q9H1X3 360 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 HEG1Q9ULI3 1381 aa13.33□□□□□ -0.27
CUX1-218ENST00000560541 GOLGA6L6A8MZA4 724 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 H3BQV1 296 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 PSEN1P49768 467 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 IFFO2Q5TF58 517 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 UBE3BQ7Z3V4 1068 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 UTYO14607 1347 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 ELP1O95163 1332 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 LMO7Q8WWI1 1683 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 NEK1Q96PY6 1258 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 DBNDD2Q9BQY9 259 aa13.33□□□□□ -0.28
CUX1-218ENST00000560541 FTOQ9C0B1 505 aaKnown RBP eCLIP13.33□□□□□ -0.28
CUX1-218ENST00000560541 A0A087WWV3 80 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 RIOK3O14730 519 aaKnown RBP13.32□□□□□ -0.28
CUX1-218ENST00000560541 NPHP3Q7Z494 1330 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 TNNI3KQ59H18 835 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 GTF3C6Q969F1 213 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 SNRKQ9NRH2 765 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 USP16Q9Y5T5 823 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 FPGT-TNNI3KV9GXZ4 949 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 CLGNO14967 610 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 ZNF496Q96IT1 587 aaPredicted RBP13.32□□□□□ -0.28
CUX1-218ENST00000560541 USP54Q70EL1 1684 aa13.32□□□□□ -0.28
CUX1-218ENST00000560541 CCDC66A2RUB6 948 aa13.31□□□□□ -0.28
CUX1-218ENST00000560541 CYP21A2P08686 494 aa13.31□□□□□ -0.28
CUX1-218ENST00000560541 CLSTN2Q9H4D0 955 aa13.31□□□□□ -0.28
CUX1-218ENST00000560541 NLRP2Q9NX02 1062 aa13.31□□□□□ -0.28
CUX1-218ENST00000560541 HMG20BQ9P0W2 317 aa13.31□□□□□ -0.28
CUX1-218ENST00000560541 TULP1O00294 542 aaPredicted RBP13.31□□□□□ -0.28
CUX1-218ENST00000560541 ZNF165P49910 485 aa13.31□□□□□ -0.28
CUX1-218ENST00000560541 PTPN12Q05209 780 aaKnown RBP13.31□□□□□ -0.28
CUX1-218ENST00000560541 CHAF1AQ13111 956 aaPredicted RBP13.31□□□□□ -0.28
CUX1-218ENST00000560541 C16orf45Q96MC5 204 aaPredicted RBP13.31□□□□□ -0.28
CUX1-218ENST00000560541 ANKRD13DQ6ZTN6 518 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 FBXW7Q969H0 707 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 METTL22Q9BUU2 404 aaPredicted RBP13.3□□□□□ -0.28
CUX1-218ENST00000560541 DDX19AQ9NUU7 478 aaKnown RBP13.3□□□□□ -0.28
CUX1-218ENST00000560541 ZNF609O15014 1411 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 NCAPD2Q15021 1401 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 CCT2P78371 535 aaKnown RBP13.3□□□□□ -0.28
CUX1-218ENST00000560541 SCRN1Q12765 414 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 A0A0G2JLW4 131 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 GTF2F1P35269 517 aaKnown RBP eCLIP13.3□□□□□ -0.282e-6■■■□□ 15.2
CUX1-218ENST00000560541 GUCY1B3Q02153 619 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 RESTQ13127 1097 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 STOX1Q6ZVD7 989 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 RAPGEF4Q8WZA2 1011 aa13.3□□□□□ -0.28
CUX1-218ENST00000560541 ATP5JP18859 108 aa13.29□□□□□ -0.28
CUX1-218ENST00000560541 CHST3Q7LGC8 479 aa13.29□□□□□ -0.28
CUX1-218ENST00000560541 NEUROD6Q96NK8 337 aa13.29□□□□□ -0.28
CUX1-218ENST00000560541 ADGRL3Q9HAR2 1447 aa13.29□□□□□ -0.28
CUX1-218ENST00000560541 ZNF75DP51815 510 aa13.29□□□□□ -0.28
CUX1-218ENST00000560541 ANKLE2Q86XL3 938 aa13.29□□□□□ -0.28
CUX1-218ENST00000560541 ERCC4Q92889 916 aaPredicted RBP13.29□□□□□ -0.28
CUX1-218ENST00000560541 SLC52A2Q9HAB3 445 aa13.29□□□□□ -0.28
CUX1-218ENST00000560541 FER1L4A9Z1Z3 1794 aa13.29□□□□□ -0.28
CUX1-218ENST00000560541 A0A087WZG4 1122 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 TPM3P06753 285 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 SLFN14P0C7P3 912 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 RFX5P48382 616 aaPredicted RBP13.28□□□□□ -0.28
CUX1-218ENST00000560541 SLC20A2Q08357 652 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 APOBRQ0VD83 1088 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 KRT32Q14532 448 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 USPL1Q5W0Q7 1092 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 NCOA5Q9HCD5 579 aaKnown RBP13.28□□□□□ -0.28
CUX1-218ENST00000560541 COPRSQ9NQ92 184 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 GOLIM4O00461 696 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 MMP14P50281 582 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 TSGA10IPQ3SY00 556 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 MCMDC2Q4G0Z9 681 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 CLIP2Q9UDT6 1046 aa13.28□□□□□ -0.28
CUX1-218ENST00000560541 CHD2O14647 1828 aaKnown RBP13.28□□□□□ -0.28
CUX1-218ENST00000560541 CCDC144BQ3MJ40 725 aa13.27□□□□□ -0.28
CUX1-218ENST00000560541 ZSCAN25Q6NSZ9 544 aa13.27□□□□□ -0.28
CUX1-218ENST00000560541 CCDC144CPQ8IYA2 1237 aa13.27□□□□□ -0.28
CUX1-218ENST00000560541 JCADQ9P266 1359 aa13.27□□□□□ -0.28
CUX1-218ENST00000560541 ERBB3P21860 1342 aa13.27□□□□□ -0.29
CUX1-218ENST00000560541 ARID5BQ14865 1188 aa13.27□□□□□ -0.29
CUX1-218ENST00000560541 LMBR1LQ6UX01 489 aa13.27□□□□□ -0.29
CUX1-218ENST00000560541 C11orf57Q6ZUT1 292 aaPredicted RBP13.27□□□□□ -0.29
CUX1-218ENST00000560541 ALDH8A1Q9H2A2 487 aaPredicted RBP13.27□□□□□ -0.29
CUX1-218ENST00000560541 U3KPZ7 1027 aaPredicted RBP13.27□□□□□ -0.29
CUX1-218ENST00000560541 TIMM10P62072 90 aa13.26□□□□□ -0.29
CUX1-218ENST00000560541 PLA2G4DQ86XP0 818 aa13.26□□□□□ -0.29
CUX1-218ENST00000560541 TTC5Q8N0Z6 440 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms