RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 EIF4A1P60842 406 aaKnown RBP12.32□□□□□ -0.44
SYNE2-224ENST00000557024 LAMB4A4D0S4 1761 aa12.31□□□□□ -0.44
SYNE2-224ENST00000557024 DDX46Q7L014 1031 aaKnown RBP12.31□□□□□ -0.44
SYNE2-224ENST00000557024 PNISRQ8TF01 805 aaKnown RBP12.31□□□□□ -0.44
SYNE2-224ENST00000557024 THUMPD2Q9BTF0 503 aaKnown RBP12.31□□□□□ -0.44
SYNE2-224ENST00000557024 DBNDD1Q9H9R9 158 aa12.31□□□□□ -0.44
SYNE2-224ENST00000557024 RIMBP2O15034 1052 aa12.3□□□□□ -0.44
SYNE2-224ENST00000557024 GRAPQ13588 217 aa12.3□□□□□ -0.44
SYNE2-224ENST00000557024 RASAL3Q86YV0 1011 aa12.3□□□□□ -0.44
SYNE2-224ENST00000557024 SULF1Q8IWU6 871 aa12.3□□□□□ -0.44
SYNE2-224ENST00000557024 GRAPLQ8TC17 118 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-224ENST00000557024 GGA3Q9NZ52 723 aa12.3□□□□□ -0.44
SYNE2-224ENST00000557024 ASTN2O75129 1339 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-224ENST00000557024 DUOX1Q9NRD9 1551 aa12.3□□□□□ -0.44
SYNE2-224ENST00000557024 NUP98P52948 1817 aa12.3□□□□□ -0.44
SYNE2-224ENST00000557024 WASHC4Q2M389 1173 aa12.29□□□□□ -0.44
SYNE2-224ENST00000557024 KIF4BQ2VIQ3 1234 aa12.29□□□□□ -0.44
SYNE2-224ENST00000557024 ZNF428Q96B54 188 aa12.29□□□□□ -0.44
SYNE2-224ENST00000557024 RNF25Q96BH1 459 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-224ENST00000557024 CDCA5Q96FF9 252 aa12.29□□□□□ -0.44
SYNE2-224ENST00000557024 KCNQ5Q9NR82 932 aa12.29□□□□□ -0.44
SYNE2-224ENST00000557024 HDAC9Q9UKV0 1011 aa12.29□□□□□ -0.44
SYNE2-224ENST00000557024 ANXA1P04083 346 aa12.28□□□□□ -0.44
SYNE2-224ENST00000557024 RPS12P25398 132 aaKnown RBP12.28□□□□□ -0.44
SYNE2-224ENST00000557024 PKN2Q16513 984 aaKnown RBP12.28□□□□□ -0.44
SYNE2-224ENST00000557024 DOK7Q18PE1 504 aa12.28□□□□□ -0.44
SYNE2-224ENST00000557024 PROSER3Q2NL68 480 aa12.28□□□□□ -0.44
SYNE2-224ENST00000557024 LRP10Q7Z4F1 713 aa12.28□□□□□ -0.44
SYNE2-224ENST00000557024 NLRP10Q86W26 655 aa12.28□□□□□ -0.44
SYNE2-224ENST00000557024 ZNF296Q8WUU4 475 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-224ENST00000557024 NSFL1CQ9UNZ2 370 aaKnown RBP12.28□□□□□ -0.44
SYNE2-224ENST00000557024 ERBB4Q15303 1308 aa12.28□□□□□ -0.44
SYNE2-224ENST00000557024 RTL9Q8NET4 1388 aa12.28□□□□□ -0.44
SYNE2-224ENST00000557024 C6orf229H3BNL8 230 aa12.27□□□□□ -0.45
SYNE2-224ENST00000557024 ECE2O60344 883 aa12.27□□□□□ -0.45
SYNE2-224ENST00000557024 TBC1D8O95759 1140 aa12.27□□□□□ -0.45
SYNE2-224ENST00000557024 PDIA6Q15084 440 aa12.27□□□□□ -0.45
SYNE2-224ENST00000557024 RASEFQ8IZ41 740 aa12.27□□□□□ -0.45
SYNE2-224ENST00000557024 GCC1Q96CN9 775 aa12.27□□□□□ -0.45
SYNE2-224ENST00000557024 TRMT112Q9UI30 125 aaKnown RBP12.27□□□□□ -0.45
SYNE2-224ENST00000557024 EIF2S2P20042 333 aaKnown RBP12.26□□□□□ -0.45
SYNE2-224ENST00000557024 TMC4Q7Z404 712 aa12.26□□□□□ -0.45
SYNE2-224ENST00000557024 FAM212AQ96EL1 285 aa12.26□□□□□ -0.45
SYNE2-224ENST00000557024 POLLQ9UGP5 575 aa12.26□□□□□ -0.45
SYNE2-224ENST00000557024 SH3TC1Q8TE82 1336 aa12.26□□□□□ -0.45
SYNE2-224ENST00000557024 C19orf67A6NJJ6 358 aa12.25□□□□□ -0.45
SYNE2-224ENST00000557024 PPP2R1AP30153 589 aa12.25□□□□□ -0.45
SYNE2-224ENST00000557024 GPSM2P81274 684 aa12.25□□□□□ -0.45
SYNE2-224ENST00000557024 AIMP1Q12904 312 aaKnown RBP12.25□□□□□ -0.45
SYNE2-224ENST00000557024 HABP4Q5JVS0 413 aaKnown RBP12.25□□□□□ -0.45
SYNE2-224ENST00000557024 ANGEL2Q5VTE6 544 aaKnown RBP12.25□□□□□ -0.45
SYNE2-224ENST00000557024 MOB2Q70IA6 237 aa12.25□□□□□ -0.45
SYNE2-224ENST00000557024 CELF1Q92879 486 aaKnown RBP12.25□□□□□ -0.45
SYNE2-224ENST00000557024 KDM3BQ7LBC6 1761 aa12.25□□□□□ -0.45
SYNE2-224ENST00000557024 NEFMP07197 916 aa12.24□□□□□ -0.45
SYNE2-224ENST00000557024 SCARF1Q14162 830 aa12.24□□□□□ -0.45
SYNE2-224ENST00000557024 HSP90AB3PQ58FF7 597 aa12.24□□□□□ -0.45
SYNE2-224ENST00000557024 FBXO46Q6PJ61 603 aaPredicted RBP12.24□□□□□ -0.45
SYNE2-224ENST00000557024 COPS6Q7L5N1 327 aa12.24□□□□□ -0.45
SYNE2-224ENST00000557024 XAGE3Q8WTP9 111 aa12.24□□□□□ -0.45
SYNE2-224ENST00000557024 NECTIN2Q92692 538 aa12.24□□□□□ -0.45
SYNE2-224ENST00000557024 UBE2Q2LH0YL09 131 aa12.23□□□□□ -0.45
SYNE2-224ENST00000557024 GPR25O00155 361 aa12.23□□□□□ -0.45
SYNE2-224ENST00000557024 VIL1P09327 827 aaKnown RBP12.23□□□□□ -0.45
SYNE2-224ENST00000557024 FKBP1BP68106 108 aa12.23□□□□□ -0.45
SYNE2-224ENST00000557024 TCIRG1Q13488 830 aa12.23□□□□□ -0.45
SYNE2-224ENST00000557024 EYA3Q99504 573 aa12.23□□□□□ -0.45
SYNE2-224ENST00000557024 TSPYL4Q9UJ04 414 aa12.23□□□□□ -0.45
SYNE2-224ENST00000557024 SCAF8Q9UPN6 1271 aaKnown RBP12.23□□□□□ -0.45
SYNE2-224ENST00000557024 ZNF280AP59817 542 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-224ENST00000557024 MKRN3Q13064 507 aaKnown RBP12.22□□□□□ -0.45
SYNE2-224ENST00000557024 NFE2L2Q16236 605 aa12.22□□□□□ -0.45
SYNE2-224ENST00000557024 PRAMEF18Q5VWM3 479 aa12.22□□□□□ -0.45
SYNE2-224ENST00000557024 TBC1D16Q8TBP0 767 aa12.22□□□□□ -0.45
SYNE2-224ENST00000557024 LRRC37AA6NMS7 1700 aa12.22□□□□□ -0.45
SYNE2-224ENST00000557024 LAMB2P55268 1798 aa12.21□□□□□ -0.45
SYNE2-224ENST00000557024 ZNF316A6NFI3 1004 aaPredicted RBP12.21□□□□□ -0.45
SYNE2-224ENST00000557024 G3V3G9 751 aa12.21□□□□□ -0.45
SYNE2-224ENST00000557024 FAM89AQ96GI7 184 aa12.21□□□□□ -0.45
SYNE2-224ENST00000557024 ZC3H12CQ9C0D7 883 aaKnown RBP12.21□□□□□ -0.45
SYNE2-224ENST00000557024 COL4A1P02462 1669 aa12.2□□□□□ -0.46
SYNE2-224ENST00000557024 FKTNO75072 461 aa12.2□□□□□ -0.46
SYNE2-224ENST00000557024 UFL1O94874 794 aa12.2□□□□□ -0.46
SYNE2-224ENST00000557024 TM4SF4P48230 202 aa12.2□□□□□ -0.46
SYNE2-224ENST00000557024 TTLL12Q14166 644 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-224ENST00000557024 SF3B3Q15393 1217 aaKnown RBP12.2□□□□□ -0.46
SYNE2-224ENST00000557024 RTL5Q5HYW3 569 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-224ENST00000557024 RSBN1LQ6PCB5 846 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-224ENST00000557024 PLEKHF1Q96S99 279 aa12.2□□□□□ -0.46
SYNE2-224ENST00000557024 R3HDMLQ9H3Y0 253 aa12.2□□□□□ -0.46
SYNE2-224ENST00000557024 ANKRD36CQ5JPF3 1778 aa12.2□□□□□ -0.46
SYNE2-224ENST00000557024 PAPPA2Q9BXP8 1791 aa12.2□□□□□ -0.46
SYNE2-224ENST00000557024 AKAP11Q9UKA4 1901 aa12.19□□□□□ -0.46
SYNE2-224ENST00000557024 POTEFA5A3E0 1075 aa12.19□□□□□ -0.46
SYNE2-224ENST00000557024 NOM1Q5C9Z4 860 aaKnown RBP12.19□□□□□ -0.46
SYNE2-224ENST00000557024 SPRYD3Q8NCJ5 442 aa12.19□□□□□ -0.46
SYNE2-224ENST00000557024 AGBL3Q8NEM8 1001 aa12.19□□□□□ -0.46
SYNE2-224ENST00000557024 MYOZ2Q9NPC6 264 aa12.19□□□□□ -0.46
SYNE2-224ENST00000557024 PITPNM2Q9BZ72 1349 aa12.18□□□□□ -0.46
SYNE2-224ENST00000557024 MKI67P46013 3256 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms