RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	SP8	Q8IXZ3	490 aa		11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	MPND	Q8N594	471 aa		11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	SUPT20H	Q8NEM7	779 aa		11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	CCER1	Q8TC90	406 aa	Predicted RBP	11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	TMX4	Q9H1E5	349 aa	Predicted RBP	11.47	□□□□□ -0.57
SYNE2-222	ENST00000556725	KDM3B	Q7LBC6	1761 aa		11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	FAM155A	B1AL88	458 aa	Predicted RBP	11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	EGFR	P00533	1210 aa		11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	ANXA1	P04083	346 aa		11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	HCLS1	P14317	486 aa	Predicted RBP	11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	KIAA2012	Q0VF49	1180 aa		11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	TNIP1	Q15025	636 aa		11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	SAMD7	Q7Z3H4	446 aa		11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	LRP10	Q7Z4F1	713 aa		11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	ZNF428	Q96B54	188 aa		11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	UTP14A	Q9BVJ6	771 aa	Known RBP	11.46	□□□□□ -0.57
SYNE2-222	ENST00000556725	LAMB2	P55268	1798 aa		11.46	□□□□□ -0.58
SYNE2-222	ENST00000556725	BBOX1	O75936	387 aa		11.45	□□□□□ -0.58
SYNE2-222	ENST00000556725	PLCG2	P16885	1265 aa		11.45	□□□□□ -0.58
SYNE2-222	ENST00000556725	IRX5	P78411	483 aa	Predicted RBP	11.45	□□□□□ -0.58
SYNE2-222	ENST00000556725	PDIA6	Q15084	440 aa		11.45	□□□□□ -0.58
SYNE2-222	ENST00000556725	PROSER3	Q2NL68	480 aa		11.45	□□□□□ -0.58
SYNE2-222	ENST00000556725	PARP10	Q53GL7	1025 aa		11.45	□□□□□ -0.58
SYNE2-222	ENST00000556725	MICALL2	Q8IY33	904 aa		11.45	□□□□□ -0.58
SYNE2-222	ENST00000556725	PNISR	Q8TF01	805 aa	Known RBP	11.45	□□□□□ -0.58
SYNE2-222	ENST00000556725	CDHR2	Q9BYE9	1310 aa		11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725		H7C1D1	291 aa		11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	TRPA1	O75762	1119 aa		11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	EIF2S2	P20042	333 aa	Known RBP	11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	KIF23	Q02241	960 aa	Predicted RBP	11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	RBM26	Q5T8P6	1007 aa	Known RBP	11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	RGMB	Q6NW40	437 aa		11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	IFNL1	Q8IU54	200 aa		11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	KCNQ5	Q9NR82	932 aa		11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	RNF186	Q9NXI6	227 aa		11.44	□□□□□ -0.58
SYNE2-222	ENST00000556725	ADM5	C9JUS6	153 aa		11.43	□□□□□ -0.58
SYNE2-222	ENST00000556725	PSMD14	O00487	310 aa		11.43	□□□□□ -0.58
SYNE2-222	ENST00000556725	KRT26	Q7Z3Y9	468 aa		11.43	□□□□□ -0.58
SYNE2-222	ENST00000556725	PLEKHF1	Q96S99	279 aa		11.43	□□□□□ -0.58
SYNE2-222	ENST00000556725	GBA2	Q9HCG7	927 aa	Predicted RBP	11.43	□□□□□ -0.58
SYNE2-222	ENST00000556725	ANKRD36C	Q5JPF3	1778 aa		11.43	□□□□□ -0.58
SYNE2-222	ENST00000556725	RIMBP2	O15034	1052 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	ZNF157	P51786	506 aa	Predicted RBP	11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	AIMP1	Q12904	312 aa	Known RBP	11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	GRAP	Q13588	217 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	DDX46	Q7L014	1031 aa	Known RBP	11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	NLRP10	Q86W26	655 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	C2orf69	Q8N8R5	385 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	GRAPL	Q8TC17	118 aa	Predicted RBP	11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	NECTIN2	Q92692	538 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	DPF2	Q92785	391 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	CSRNP1	Q96S65	589 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	TMEM106C	Q9BVX2	250 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	DBNDD1	Q9H9R9	158 aa		11.42	□□□□□ -0.58
SYNE2-222	ENST00000556725	DUOX1	Q9NRD9	1551 aa		11.41	□□□□□ -0.58
SYNE2-222	ENST00000556725	PDE4DIP	Q5VU43	2346 aa		11.41	□□□□□ -0.58
SYNE2-222	ENST00000556725	NFE2L2	Q16236	605 aa		11.41	□□□□□ -0.58
SYNE2-222	ENST00000556725	COPS6	Q7L5N1	327 aa		11.41	□□□□□ -0.58
SYNE2-222	ENST00000556725	CCDC102A	Q96A19	550 aa		11.41	□□□□□ -0.58
SYNE2-222	ENST00000556725	SAGE1	Q9NXZ1	904 aa		11.41	□□□□□ -0.58
SYNE2-222	ENST00000556725	TRMT112	Q9UI30	125 aa	Known RBP	11.41	□□□□□ -0.58
SYNE2-222	ENST00000556725	AKAP11	Q9UKA4	1901 aa		11.41	□□□□□ -0.58
SYNE2-222	ENST00000556725	ASTN2	O75129	1339 aa	Predicted RBP	11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	ERBB4	Q15303	1308 aa		11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	SNPH	O15079	494 aa		11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	NUBP1	P53384	320 aa		11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	TCIRG1	Q13488	830 aa		11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	DOK7	Q18PE1	504 aa		11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	WASHC4	Q2M389	1173 aa		11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	XAGE3	Q8WTP9	111 aa		11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	DCPS	Q96C86	337 aa	Known RBP	11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	POLL	Q9UGP5	575 aa		11.4	□□□□□ -0.58
SYNE2-222	ENST00000556725	NEFM	P07197	916 aa		11.39	□□□□□ -0.59
SYNE2-222	ENST00000556725	CELF1	Q92879	486 aa	Known RBP	11.39	□□□□□ -0.59
SYNE2-222	ENST00000556725	TSPYL4	Q9UJ04	414 aa		11.39	□□□□□ -0.59
SYNE2-222	ENST00000556725	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.39	□□□□□ -0.59
SYNE2-222	ENST00000556725	COL4A1	P02462	1669 aa		11.39	□□□□□ -0.59
SYNE2-222	ENST00000556725	RTL9	Q8NET4	1388 aa		11.39	□□□□□ -0.59
SYNE2-222	ENST00000556725	C6orf229	H3BNL8	230 aa		11.38	□□□□□ -0.59
SYNE2-222	ENST00000556725	ECE2	O60344	883 aa		11.38	□□□□□ -0.59
SYNE2-222	ENST00000556725	SLC10A3	P09131	477 aa		11.38	□□□□□ -0.59
SYNE2-222	ENST00000556725	GPSM2	P81274	684 aa		11.38	□□□□□ -0.59
SYNE2-222	ENST00000556725	CTU1	Q7Z7A3	348 aa	Known RBP	11.38	□□□□□ -0.59
SYNE2-222	ENST00000556725	SH3TC1	Q8TE82	1336 aa		11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	KIF4B	Q2VIQ3	1234 aa		11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	HSP90AB3P	Q58FF7	597 aa		11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	PRPF38B	Q5VTL8	546 aa	Known RBP	11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	CDCA5	Q96FF9	252 aa		11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	GGA3	Q9NZ52	723 aa		11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	SCAF8	Q9UPN6	1271 aa	Known RBP	11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	HPS5	Q9UPZ3	1129 aa		11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	SCN9A	Q15858	1988 aa		11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	LRRC37A	A6NMS7	1700 aa		11.37	□□□□□ -0.59
SYNE2-222	ENST00000556725	DDX60	Q8IY21	1712 aa	Known RBP	11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	VIL1	P09327	827 aa	Known RBP	11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	RPS12	P25398	132 aa	Known RBP	11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	KRT24	Q2M2I5	525 aa		11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	RTL5	Q5HYW3	569 aa	Predicted RBP	11.36	□□□□□ -0.59
SYNE2-222	ENST00000556725	MOB2	Q70IA6	237 aa		11.36	□□□□□ -0.59

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