RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.4■□□□□ 0.388e-7■■■□□ 15.1
CUX1-215ENST00000556210 RPS6KB1P23443 525 aa17.4■□□□□ 0.38
CUX1-215ENST00000556210 SLC9C2Q5TAH2 1124 aa17.4■□□□□ 0.38
CUX1-215ENST00000556210 PI16Q6UXB8 463 aa17.4■□□□□ 0.38
CUX1-215ENST00000556210 TAF6LQ9Y6J9 622 aa17.39■□□□□ 0.38
CUX1-215ENST00000556210 CCDC186Q7Z3E2 898 aa17.39■□□□□ 0.37
CUX1-215ENST00000556210 RAI14Q9P0K7 980 aa17.39■□□□□ 0.37
CUX1-215ENST00000556210 FTOQ9C0B1 505 aaKnown RBP eCLIP17.39■□□□□ 0.37
CUX1-215ENST00000556210 BABAM1Q9NWV8 329 aa17.39■□□□□ 0.37
CUX1-215ENST00000556210 MTMR6Q9Y217 621 aa17.39■□□□□ 0.37
CUX1-215ENST00000556210 ARHGEF28Q8N1W1 1705 aaKnown RBP17.39■□□□□ 0.37
CUX1-215ENST00000556210 ZNF500O60304 480 aaPredicted RBP17.38■□□□□ 0.37
CUX1-215ENST00000556210 PDCL2Q8N4E4 241 aa17.38■□□□□ 0.37
CUX1-215ENST00000556210 PTPDC1A2A3K4 754 aa17.38■□□□□ 0.37
CUX1-215ENST00000556210 POLA2Q14181 598 aa17.38■□□□□ 0.37
CUX1-215ENST00000556210 JAG2Q9Y219 1238 aa17.38■□□□□ 0.37
CUX1-215ENST00000556210 SPDYE4A6NLX3 237 aa17.38■□□□□ 0.37
CUX1-215ENST00000556210 DDIT3P35638 169 aa17.38■□□□□ 0.37
CUX1-215ENST00000556210 ERBB3P21860 1342 aa17.38■□□□□ 0.37
CUX1-215ENST00000556210 SYNE4Q8N205 404 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 DHX16O60231 1041 aaKnown RBP17.37■□□□□ 0.37
CUX1-215ENST00000556210 TYRO3Q06418 890 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 SAFBQ15424 915 aaKnown RBP eCLIP17.37■□□□□ 0.37
CUX1-215ENST00000556210 ATP2B3Q16720 1220 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 PPP4R3BQ5MIZ7 849 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 ZBTB9Q96C00 473 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 ZKSCAN3Q9BRR0 538 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 CTNNA3Q9UI47 895 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 CYP27B1O15528 508 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 TTC6Q86TZ1 520 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 CCDC24Q8N4L8 307 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 PTGS1P23219 599 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 IL15P40933 162 aaPredicted RBP17.37■□□□□ 0.37
CUX1-215ENST00000556210 TERF1P54274 439 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 CLIP2Q9UDT6 1046 aa17.37■□□□□ 0.37
CUX1-215ENST00000556210 TMEM131LA2VDJ0 1609 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 OVOS2A0A0J9YW53 1432 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 OVOS2Q6IE36 1432 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 IL2RBP14784 551 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 NAPBQ9H115 298 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 CUL4AQ13619 759 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 MYL10Q9BUA6 226 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 AKAP2Q9Y2D5 859 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 CCDC69A6NI79 296 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 MIGA1Q8NAN2 632 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 PLBD2Q8NHP8 589 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 GPHNQ9NQX3 736 aaPredicted RBP17.36■□□□□ 0.37
CUX1-215ENST00000556210 BTG4Q9NY30 223 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 HMG20BQ9P0W2 317 aa17.36■□□□□ 0.37
CUX1-215ENST00000556210 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.36■□□□□ 0.37
CUX1-215ENST00000556210 A0A1B0GVL5 298 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 ANKRD18BA2A2Z9 1011 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 TAF5LO75529 589 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 SHPRHQ149N8 1683 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 AK9Q5TCS8 1911 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 KDRP35968 1356 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 SNAP23O00161 211 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 TMX1Q9H3N1 280 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 ADCY9O60503 1353 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 TPM3P06753 285 aa17.35■□□□□ 0.37
CUX1-215ENST00000556210 ADORA1P30542 326 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 ZSWIM6Q9HCJ5 1215 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 EYA2O00167 538 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 EXOC5O00471 708 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 IFIT3O14879 490 aaKnown RBP17.34■□□□□ 0.37
CUX1-215ENST00000556210 PRC1O43663 620 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 SERPINC1P01008 464 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 DHX32Q7L7V1 743 aaKnown RBP17.34■□□□□ 0.37
CUX1-215ENST00000556210 SIGLEC1Q9BZZ2 1709 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 ASAP1Q9ULH1 1129 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 CEP170BQ9Y4F5 1589 aaPredicted RBP17.34■□□□□ 0.37
CUX1-215ENST00000556210 CYP21A2P08686 494 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 ZAP70P43403 619 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 PRIMPOLQ96LW4 560 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 PREX1Q8TCU6 1659 aa17.34■□□□□ 0.37
CUX1-215ENST00000556210 PTPN12Q05209 780 aaKnown RBP17.33■□□□□ 0.37
CUX1-215ENST00000556210 AOX1Q06278 1338 aa17.33■□□□□ 0.37
CUX1-215ENST00000556210 UVSSAQ2YD98 709 aa17.33■□□□□ 0.36
CUX1-215ENST00000556210 MAP4K1Q92918 833 aa17.33■□□□□ 0.36
CUX1-215ENST00000556210 USP31Q70CQ4 1352 aa17.33■□□□□ 0.36
CUX1-215ENST00000556210 KBTBD3Q8NAB2 608 aa17.33■□□□□ 0.36
CUX1-215ENST00000556210 XAGE2Q96GT9 111 aa17.33■□□□□ 0.36
CUX1-215ENST00000556210 CEP57L1Q8IYX8 460 aa17.32■□□□□ 0.36
CUX1-215ENST00000556210 NAT10Q9H0A0 1025 aaKnown RBP17.32■□□□□ 0.36
CUX1-215ENST00000556210 MYO5BQ9ULV0 1848 aa17.32■□□□□ 0.36
CUX1-215ENST00000556210 RNF113AO15541 343 aaKnown RBP17.32■□□□□ 0.36
CUX1-215ENST00000556210 GJB4Q9NTQ9 266 aa17.32■□□□□ 0.36
CUX1-215ENST00000556210 NR1I2O75469 434 aa17.32■□□□□ 0.36
CUX1-215ENST00000556210 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.32■□□□□ 0.36
CUX1-215ENST00000556210 V9GYY5 206 aaPredicted RBP17.32■□□□□ 0.36
CUX1-215ENST00000556210 TMEM94Q12767 1356 aa17.32■□□□□ 0.36
CUX1-215ENST00000556210 KLHL10Q6JEL2 608 aa17.31■□□□□ 0.36
CUX1-215ENST00000556210 FAM200AQ8TCP9 573 aa17.31■□□□□ 0.36
CUX1-215ENST00000556210 LEO1Q8WVC0 666 aaPredicted RBP17.31■□□□□ 0.36
CUX1-215ENST00000556210 IRS4O14654 1257 aaPredicted RBP17.31■□□□□ 0.36
CUX1-215ENST00000556210 KCNQ4P56696 695 aa17.31■□□□□ 0.36
CUX1-215ENST00000556210 SLC26A6Q9BXS9 759 aa17.31■□□□□ 0.36
CUX1-215ENST00000556210 RGS12O14924 1447 aa17.31■□□□□ 0.36
CUX1-215ENST00000556210 RANBP6O60518 1105 aaKnown RBP17.31■□□□□ 0.36
CUX1-215ENST00000556210 SART3Q15020 963 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 182.4 ms