RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SLC10A5Q5PT55 438 aa14.13□□□□□ -0.15
SHMT2-216ENST00000554975 WDR63Q8IWG1 891 aa14.13□□□□□ -0.15
SHMT2-216ENST00000554975 PSME4Q14997 1843 aa14.13□□□□□ -0.15
SHMT2-216ENST00000554975 HTTP42858 3142 aa14.12□□□□□ -0.15
SHMT2-216ENST00000554975 CT47B1P0C2W7 299 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-216ENST00000554975 HCLS1P14317 486 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-216ENST00000554975 EIF4A1P60842 406 aaKnown RBP14.12□□□□□ -0.15
SHMT2-216ENST00000554975 RBM26Q5T8P6 1007 aaKnown RBP14.12□□□□□ -0.15
SHMT2-216ENST00000554975 LRP10Q7Z4F1 713 aa14.12□□□□□ -0.15
SHMT2-216ENST00000554975 PPP1R42Q7Z4L9 355 aa14.12□□□□□ -0.15
SHMT2-216ENST00000554975 RASAL3Q86YV0 1011 aa14.12□□□□□ -0.15
SHMT2-216ENST00000554975 CCDC146Q8IYE0 955 aa14.12□□□□□ -0.15
SHMT2-216ENST00000554975 THUMPD2Q9BTF0 503 aaKnown RBP14.12□□□□□ -0.15
SHMT2-216ENST00000554975 ANP32EQ9BTT0 268 aa14.12□□□□□ -0.15
SHMT2-216ENST00000554975 TMX4Q9H1E5 349 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-216ENST00000554975 DBNDD1Q9H9R9 158 aa14.12□□□□□ -0.15
SHMT2-216ENST00000554975 KIAA0100Q14667 2235 aaKnown RBP14.12□□□□□ -0.15
SHMT2-216ENST00000554975 RTL9Q8NET4 1388 aa14.11□□□□□ -0.15
SHMT2-216ENST00000554975 BBOX1O75936 387 aa14.11□□□□□ -0.15
SHMT2-216ENST00000554975 ANP32AP39687 249 aaKnown RBP14.11□□□□□ -0.15
SHMT2-216ENST00000554975 CENPFP49454 3210 aa14.11□□□□□ -0.15
SHMT2-216ENST00000554975 CENPQQ7L2Z9 268 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-216ENST00000554975 DPF2Q92785 391 aa14.11□□□□□ -0.15
SHMT2-216ENST00000554975 MYH16Q9H6N6 1097 aa14.11□□□□□ -0.15
SHMT2-216ENST00000554975 PAPPA2Q9BXP8 1791 aa14.11□□□□□ -0.15
SHMT2-216ENST00000554975 HTATSF1O43719 755 aaKnown RBP14.1□□□□□ -0.15
SHMT2-216ENST00000554975 PARP10Q53GL7 1025 aa14.1□□□□□ -0.15
SHMT2-216ENST00000554975 ZNF296Q8WUU4 475 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-216ENST00000554975 ZNF428Q96B54 188 aa14.1□□□□□ -0.15
SHMT2-216ENST00000554975 CDCA5Q96FF9 252 aa14.1□□□□□ -0.15
SHMT2-216ENST00000554975 CRBNQ96SW2 442 aa14.1□□□□□ -0.15
SHMT2-216ENST00000554975 UTP14AQ9BVJ6 771 aaKnown RBP14.1□□□□□ -0.15
SHMT2-216ENST00000554975 GGA3Q9NZ52 723 aa14.1□□□□□ -0.15
SHMT2-216ENST00000554975 BRCA2P51587 3418 aa14.1□□□□□ -0.15
SHMT2-216ENST00000554975 TBC1D8O95759 1140 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 ANXA1P04083 346 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 GRAPQ13588 217 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 PDE3AQ14432 1141 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 PDIA6Q15084 440 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 NFE2L2Q16236 605 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 PROSER3Q2NL68 480 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 HABP4Q5JVS0 413 aaKnown RBP14.09□□□□□ -0.15
SHMT2-216ENST00000554975 WWC1Q8IX03 1113 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 GRAPLQ8TC17 118 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-216ENST00000554975 DCPSQ96C86 337 aaKnown RBP14.09□□□□□ -0.15
SHMT2-216ENST00000554975 PLEKHF1Q96S99 279 aa14.09□□□□□ -0.15
SHMT2-216ENST00000554975 RIMBP2O15034 1052 aa14.08□□□□□ -0.16
SHMT2-216ENST00000554975 KIF4BQ2VIQ3 1234 aa14.08□□□□□ -0.16
SHMT2-216ENST00000554975 MOB2Q70IA6 237 aa14.08□□□□□ -0.16
SHMT2-216ENST00000554975 RBBP6Q7Z6E9 1792 aaKnown RBP14.07□□□□□ -0.16
SHMT2-216ENST00000554975 ECE2O60344 883 aa14.07□□□□□ -0.16
SHMT2-216ENST00000554975 DOK7Q18PE1 504 aa14.07□□□□□ -0.16
SHMT2-216ENST00000554975 WASHC4Q2M389 1173 aa14.07□□□□□ -0.16
SHMT2-216ENST00000554975 DDX46Q7L014 1031 aaKnown RBP14.07□□□□□ -0.16
SHMT2-216ENST00000554975 NLRP10Q86W26 655 aa14.07□□□□□ -0.16
SHMT2-216ENST00000554975 IL16Q14005 1332 aa14.07□□□□□ -0.16
SHMT2-216ENST00000554975 CEP290O15078 2479 aa14.06□□□□□ -0.16
SHMT2-216ENST00000554975 ZNF646O15015 1829 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-216ENST00000554975 NEUROD2Q15784 382 aa14.06□□□□□ -0.16
SHMT2-216ENST00000554975 PKN2Q16513 984 aaKnown RBP14.06□□□□□ -0.16
SHMT2-216ENST00000554975 SULF1Q8IWU6 871 aa14.06□□□□□ -0.16
SHMT2-216ENST00000554975 POLLQ9UGP5 575 aa14.06□□□□□ -0.16
SHMT2-216ENST00000554975 HDAC9Q9UKV0 1011 aa14.06□□□□□ -0.16
SHMT2-216ENST00000554975 SCAF8Q9UPN6 1271 aaKnown RBP14.06□□□□□ -0.16
SHMT2-216ENST00000554975 RIPK4P57078 832 aa14.05□□□□□ -0.16
SHMT2-216ENST00000554975 GPSM2P81274 684 aa14.05□□□□□ -0.16
SHMT2-216ENST00000554975 CELF1Q92879 486 aaKnown RBP14.05□□□□□ -0.16
SHMT2-216ENST00000554975 R3HDMLQ9H3Y0 253 aa14.05□□□□□ -0.16
SHMT2-216ENST00000554975 SZT2Q5T011 3432 aa14.05□□□□□ -0.16
SHMT2-216ENST00000554975 TRIOBPQ9H2D6 2365 aa14.04□□□□□ -0.16
SHMT2-216ENST00000554975 RPS12P25398 132 aaKnown RBP14.04□□□□□ -0.16
SHMT2-216ENST00000554975 FBXO46Q6PJ61 603 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-216ENST00000554975 GCC1Q96CN9 775 aa14.04□□□□□ -0.16
SHMT2-216ENST00000554975 NSFL1CQ9UNZ2 370 aaKnown RBP14.04□□□□□ -0.16
SHMT2-216ENST00000554975 ERBB4Q15303 1308 aa14.04□□□□□ -0.16
SHMT2-216ENST00000554975 C6orf229H3BNL8 230 aa14.03□□□□□ -0.16
SHMT2-216ENST00000554975 GPR25O00155 361 aa14.03□□□□□ -0.16
SHMT2-216ENST00000554975 VIL1P09327 827 aaKnown RBP14.03□□□□□ -0.16
SHMT2-216ENST00000554975 EIF2S2P20042 333 aaKnown RBP14.03□□□□□ -0.16
SHMT2-216ENST00000554975 ANGEL2Q5VTE6 544 aaKnown RBP14.03□□□□□ -0.16
SHMT2-216ENST00000554975 REM2Q8IYK8 340 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-216ENST00000554975 TRMT112Q9UI30 125 aaKnown RBP14.03□□□□□ -0.16
SHMT2-216ENST00000554975 SH3TC1Q8TE82 1336 aa14.02□□□□□ -0.17
SHMT2-216ENST00000554975 POTEFA5A3E0 1075 aa14.02□□□□□ -0.17
SHMT2-216ENST00000554975 UBE2Q2LH0YL09 131 aa14.02□□□□□ -0.17
SHMT2-216ENST00000554975 PLIN1O60240 522 aa14.02□□□□□ -0.17
SHMT2-216ENST00000554975 TMPOP42166 694 aaKnown RBP14.02□□□□□ -0.17
SHMT2-216ENST00000554975 FXR1P51114 621 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHMT2-216ENST00000554975 CALD1Q05682 793 aaKnown RBP14.02□□□□□ -0.17
SHMT2-216ENST00000554975 LMOD3Q0VAK6 560 aa14.02□□□□□ -0.17
SHMT2-216ENST00000554975 MKRN3Q13064 507 aaKnown RBP14.02□□□□□ -0.17
SHMT2-216ENST00000554975 SCARF1Q14162 830 aa14.02□□□□□ -0.17
SHMT2-216ENST00000554975 PRAMEF18Q5VWM3 479 aa14.02□□□□□ -0.17
SHMT2-216ENST00000554975 AIMP1Q12904 312 aaKnown RBP14.01□□□□□ -0.17
SHMT2-216ENST00000554975 TMC4Q7Z404 712 aa14.01□□□□□ -0.17
SHMT2-216ENST00000554975 NECTIN2Q92692 538 aa14.01□□□□□ -0.17
SHMT2-216ENST00000554975 LAMB1P07942 1786 aa14.01□□□□□ -0.17
SHMT2-216ENST00000554975 TM4SF4P48230 202 aa14□□□□□ -0.17
SHMT2-216ENST00000554975 ZNF280AP59817 542 aaPredicted RBP14□□□□□ -0.17
SHMT2-216ENST00000554975 TCIRG1Q13488 830 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms