RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 PAG1Q9NWQ8 432 aa14.01□□□□□ -0.17
SHMT2-212ENST00000554467 CSF1RP07333 972 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 BICDL1Q6ZP65 573 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 LARGE1O95461 756 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 XAGE2Q96GT9 111 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 ZNF609O15014 1411 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 NUP98P52948 1817 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 NECTIN1Q15223 517 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 TPRNQ4KMQ1 711 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 RUFY3Q7L099 469 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 LINC00116Q8NCU8 138 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 ZDHHC9Q9Y397 364 aa14□□□□□ -0.17
SHMT2-212ENST00000554467 HIP1O00291 1037 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 SLC27A2O14975 620 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 MAP4K1Q92918 833 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 SEC31BQ9NQW1 1179 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 NIP7Q9Y221 180 aaKnown RBP eCLIP13.99□□□□□ -0.17
SHMT2-212ENST00000554467 DDX11L8A8MPP1 907 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 ZNF34Q8IZ26 560 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 TRIM44Q96DX7 344 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-212ENST00000554467 GBP4Q96PP9 640 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 CIAO1O76071 339 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 CAMTA2O94983 1202 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 FGD1P98174 961 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 VPS72Q15906 364 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 TTC39AQ5SRH9 613 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 MEX3CQ5U5Q3 659 aaKnown RBP13.99□□□□□ -0.17
SHMT2-212ENST00000554467 VPS53Q5VIR6 699 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 MCTP1Q6DN14 999 aa13.99□□□□□ -0.17
SHMT2-212ENST00000554467 JCADQ9P266 1359 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 ANKRD18BA2A2Z9 1011 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 TAF5LO75529 589 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 TTC14Q96N46 770 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 A0A0G2JLW4 131 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 ERVV-1B6SEH8 477 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 BAG4O95429 457 aaKnown RBP13.98□□□□□ -0.17
SHMT2-212ENST00000554467 KBTBD3Q8NAB2 608 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 PLA2G12BQ9BX93 195 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 MED23Q9ULK4 1368 aa13.98□□□□□ -0.17
SHMT2-212ENST00000554467 OFD1O75665 1012 aa13.97□□□□□ -0.17
SHMT2-212ENST00000554467 ZKSCAN1P17029 563 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-212ENST00000554467 CCDC24Q8N4L8 307 aa13.97□□□□□ -0.17
SHMT2-212ENST00000554467 PDRG1Q9NUG6 133 aa13.97□□□□□ -0.17
SHMT2-212ENST00000554467 ATP2B3Q16720 1220 aa13.97□□□□□ -0.17
SHMT2-212ENST00000554467 RIPOR2Q9Y4F9 1068 aa13.97□□□□□ -0.17
SHMT2-212ENST00000554467 PDE8AO60658 829 aa13.97□□□□□ -0.17
SHMT2-212ENST00000554467 NECAB1Q8N987 351 aa13.97□□□□□ -0.17
SHMT2-212ENST00000554467 CDHR2Q9BYE9 1310 aa13.97□□□□□ -0.17
SHMT2-212ENST00000554467 MCM2P49736 904 aa13.96□□□□□ -0.17
SHMT2-212ENST00000554467 CYP46A1Q9Y6A2 500 aa13.96□□□□□ -0.17
SHMT2-212ENST00000554467 HSPA1LP34931 641 aa13.96□□□□□ -0.17
SHMT2-212ENST00000554467 ZAP70P43403 619 aa13.96□□□□□ -0.17
SHMT2-212ENST00000554467 CUL4AQ13619 759 aa13.96□□□□□ -0.17
SHMT2-212ENST00000554467 CCDC158Q5M9N0 1113 aa13.96□□□□□ -0.17
SHMT2-212ENST00000554467 GPR108Q9NPR9 543 aa13.96□□□□□ -0.17
SHMT2-212ENST00000554467 RIC1Q4ADV7 1423 aa13.96□□□□□ -0.17
SHMT2-212ENST00000554467 NUCB2P80303 420 aa13.96□□□□□ -0.18
SHMT2-212ENST00000554467 CCDC83Q8IWF9 413 aa13.96□□□□□ -0.18
SHMT2-212ENST00000554467 UTP14AQ9BVJ6 771 aaKnown RBP13.96□□□□□ -0.18
SHMT2-212ENST00000554467 CWC22Q9HCG8 908 aaKnown RBP13.96□□□□□ -0.18
SHMT2-212ENST00000554467 FAM13BQ9NYF5 915 aa13.96□□□□□ -0.18
SHMT2-212ENST00000554467 SH3TC1Q8TE82 1336 aa13.96□□□□□ -0.18
SHMT2-212ENST00000554467 NWD2Q9ULI1 1742 aa13.95□□□□□ -0.18
SHMT2-212ENST00000554467 CYP2E1P05181 493 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-212ENST00000554467 MCMDC2Q4G0Z9 681 aa13.95□□□□□ -0.18
SHMT2-212ENST00000554467 FNBP4Q8N3X1 1017 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-212ENST00000554467 LRRC2Q9BYS8 371 aa13.95□□□□□ -0.18
SHMT2-212ENST00000554467 EPB41L2O43491 1005 aaKnown RBP13.95□□□□□ -0.18
SHMT2-212ENST00000554467 AMIGO3Q86WK7 504 aa13.95□□□□□ -0.18
SHMT2-212ENST00000554467 IL17RAQ96F46 866 aa13.95□□□□□ -0.18
SHMT2-212ENST00000554467 ZSWIM6Q9HCJ5 1215 aa13.95□□□□□ -0.18
SHMT2-212ENST00000554467 SRP68Q9UHB9 627 aaKnown RBP13.95□□□□□ -0.18
SHMT2-212ENST00000554467 LIMCH1Q9UPQ0 1083 aa13.95□□□□□ -0.18
SHMT2-212ENST00000554467 AKAP2Q9Y2D5 859 aa13.95□□□□□ -0.18
SHMT2-212ENST00000554467 DDX49Q9Y6V7 483 aaKnown RBP13.95□□□□□ -0.18
SHMT2-212ENST00000554467 WASHC4Q2M389 1173 aa13.94□□□□□ -0.18
SHMT2-212ENST00000554467 SMARCC1Q92922 1105 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-212ENST00000554467 GOLGA6L22H0YM25 854 aa13.94□□□□□ -0.18
SHMT2-212ENST00000554467 M0R2C6 588 aa13.94□□□□□ -0.18
SHMT2-212ENST00000554467 STK3Q13188 491 aa13.94□□□□□ -0.18
SHMT2-212ENST00000554467 C3orf67Q6ZVT6 689 aa13.94□□□□□ -0.18
SHMT2-212ENST00000554467 WTIPA6NIX2 430 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-212ENST00000554467 ISY1Q9ULR0 285 aaKnown RBP13.93□□□□□ -0.18
SHMT2-212ENST00000554467 MCAMP43121 646 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 PHKA1P46020 1223 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 OSBP2Q969R2 916 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 PPP1R9BQ96SB3 815 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 ANKRD36CQ5JPF3 1778 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 CYP21A2P08686 494 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 ME3Q16798 604 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 TTLL5Q6EMB2 1281 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 TPCN1Q9ULQ1 816 aa13.93□□□□□ -0.18
SHMT2-212ENST00000554467 MAST3O60307 1309 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 NTSR2O95665 410 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 RNF20Q5VTR2 975 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 BLOC1S2Q6QNY1 142 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 ARID3AQ99856 593 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 PRPF40AO75400 957 aaKnown RBP13.92□□□□□ -0.18
SHMT2-212ENST00000554467 PHF14O94880 888 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 ERFEQ4G0M1 354 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms