RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CLCN6P51797 869 aa16.38■□□□□ 0.21
LIMS1-215ENST00000544547 CCDC181Q5TID7 509 aa16.38■□□□□ 0.21
LIMS1-215ENST00000544547 MEX3CQ5U5Q3 659 aaKnown RBP16.38■□□□□ 0.21
LIMS1-215ENST00000544547 RTL1A6NKG5 1358 aa16.38■□□□□ 0.21
LIMS1-215ENST00000544547 GOLGA6L9A6NEM1 432 aa16.38■□□□□ 0.21
LIMS1-215ENST00000544547 CCDC148Q8NFR7 591 aa16.38■□□□□ 0.21
LIMS1-215ENST00000544547 MYOM2P54296 1465 aa16.38■□□□□ 0.21
LIMS1-215ENST00000544547 HAND2P61296 217 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 CT47A1Q5JQC4 288 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-215ENST00000544547 KIAA1328Q86T90 577 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 UNC13BO14795 1591 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 SYKP43405 635 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 ORC3Q9UBD5 711 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-215ENST00000544547 MADDQ8WXG6 1647 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 CTAGE15A4D2H0 777 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 USP27XA6NNY8 438 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 CTAGE8P0CG41 777 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 MATR3P43243 847 aaKnown RBP eCLIP16.37■□□□□ 0.211e-8■■■□□ 14.8
LIMS1-215ENST00000544547 DNA2P51530 1060 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 CTAGE6Q86UF2 777 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 CTAGE4Q8IX94 777 aa16.37■□□□□ 0.21
LIMS1-215ENST00000544547 ZC3H6P61129 1189 aaKnown RBP16.36■□□□□ 0.21
LIMS1-215ENST00000544547 PTPN21Q16825 1174 aa16.36■□□□□ 0.21
LIMS1-215ENST00000544547 MAP9Q49MG5 647 aa16.36■□□□□ 0.21
LIMS1-215ENST00000544547 LARGE1O95461 756 aa16.36■□□□□ 0.21
LIMS1-215ENST00000544547 FAM227BQ96M60 508 aa16.36■□□□□ 0.21
LIMS1-215ENST00000544547 ADCK5Q3MIX3 580 aa16.36■□□□□ 0.21
LIMS1-215ENST00000544547 SOS1Q07889 1333 aaPredicted RBP16.36■□□□□ 0.21
LIMS1-215ENST00000544547 SART3Q15020 963 aaKnown RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 ODF2Q5BJF6 829 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 CCDC85AQ96PX6 553 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 NLRP1Q9C000 1473 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 WDHD1O75717 1129 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 XBP1P17861 261 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 ZNF569Q5MCW4 686 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 CCDC43Q96MW1 224 aaKnown RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 NUP88Q99567 741 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 POTEB2H3BUK9 544 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 CALRP27797 417 aaKnown RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 ETF1P62495 437 aaKnown RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 PTH1RQ03431 593 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 FAM160A1Q05DH4 1040 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 APOBRQ0VD83 1088 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 DDX46Q7L014 1031 aaKnown RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 NBPF11Q86T75 865 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 ANKRD7Q92527 254 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 ZNHIT6Q9NWK9 470 aaKnown RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 POGZQ7Z3K3 1410 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 OTUD7BQ6GQQ9 843 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 CCDC144CPQ8IYA2 1237 aa16.35■□□□□ 0.21
LIMS1-215ENST00000544547 MORC2Q9Y6X9 1032 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-215ENST00000544547 GOLGA8BA8MQT2 603 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 ATP2C2O75185 946 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 PNMA6AP0CW24 399 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-215ENST00000544547 AK9Q5TCS8 1911 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 RGS12O14924 1447 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 PIK3R4Q99570 1358 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 FANCCQ00597 558 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 RAD51AP2Q09MP3 1159 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 E2F4Q16254 413 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 CWF19L2Q2TBE0 894 aaKnown RBP16.34■□□□□ 0.21
LIMS1-215ENST00000544547 CCDC144BQ3MJ40 725 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 GDAP1L1Q96MZ0 367 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 TPCN1Q9ULQ1 816 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 U3KPZ7 1027 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-215ENST00000544547 EBAG9O00559 213 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 C11orf57Q6ZUT1 292 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-215ENST00000544547 HDXQ7Z353 690 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 TICAM2Q86XR7 235 aa16.34■□□□□ 0.21
LIMS1-215ENST00000544547 DBF4Q9UBU7 674 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-215ENST00000544547 TUBB4AP04350 444 aa16.33■□□□□ 0.21
LIMS1-215ENST00000544547 NBPF7P0C2Y1 421 aaPredicted RBP16.33■□□□□ 0.21
LIMS1-215ENST00000544547 BAG1Q99933 345 aaPredicted RBP16.33■□□□□ 0.21
LIMS1-215ENST00000544547 TMEM51Q9NW97 253 aa16.33■□□□□ 0.21
LIMS1-215ENST00000544547 PTPDC1A2A3K4 754 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 BRMS1Q9HCU9 246 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 CNNM1Q9NRU3 951 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 SPTLC2O15270 562 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 ZNF853P0CG23 659 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 SYCP1Q15431 976 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 CCDC102BQ68D86 513 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 TDRD7Q8NHU6 1098 aaKnown RBP16.33■□□□□ 0.2
LIMS1-215ENST00000544547 MYD88Q99836 296 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 NCOA5Q9HCD5 579 aaKnown RBP16.33■□□□□ 0.2
LIMS1-215ENST00000544547 NCOA3Q9Y6Q9 1424 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 PPARDQ03181 441 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 TOM1L2Q6ZVM7 507 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 HYPKQ9NX55 129 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 PLXNC1O60486 1568 aa16.33■□□□□ 0.2
LIMS1-215ENST00000544547 GOLGA6L10A6NI86 522 aa16.32■□□□□ 0.2
LIMS1-215ENST00000544547 CCDC175P0C221 793 aa16.32■□□□□ 0.2
LIMS1-215ENST00000544547 SLFN14P0C7P3 912 aa16.32■□□□□ 0.2
LIMS1-215ENST00000544547 PIP4K2AP48426 406 aaPredicted RBP16.32■□□□□ 0.2
LIMS1-215ENST00000544547 GOLGA8FQ08AF8 430 aa16.32■□□□□ 0.2
LIMS1-215ENST00000544547 GOLGA8DPQ0D2H9 430 aa16.32■□□□□ 0.2
LIMS1-215ENST00000544547 RRP15Q9Y3B9 282 aaKnown RBP16.32■□□□□ 0.2
LIMS1-215ENST00000544547 CHMP4BP1P59074 171 aa16.32■□□□□ 0.2
LIMS1-215ENST00000544547 KIF6Q6ZMV9 814 aa16.32■□□□□ 0.2
LIMS1-215ENST00000544547 NUP133Q8WUM0 1156 aa16.32■□□□□ 0.2
LIMS1-215ENST00000544547 EPC1Q9H2F5 836 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms