RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 RUFY2Q8WXA3 655 aa17.29■□□□□ 0.36
VPS33A-209ENST00000544349 HAUS7Q99871 368 aa17.29■□□□□ 0.36
VPS33A-209ENST00000544349 ERFEQ4G0M1 354 aa17.28■□□□□ 0.36
VPS33A-209ENST00000544349 CCDC152Q4G0S7 254 aa17.28■□□□□ 0.36
VPS33A-209ENST00000544349 METTL24Q5JXM2 366 aa17.28■□□□□ 0.36
VPS33A-209ENST00000544349 C4AP0C0L4 1744 aa17.28■□□□□ 0.36
VPS33A-209ENST00000544349 LRP5O75197 1615 aa17.28■□□□□ 0.36
VPS33A-209ENST00000544349 RTL9Q8NET4 1388 aa17.28■□□□□ 0.36
VPS33A-209ENST00000544349 FSD1Q9BTV5 496 aa17.27■□□□□ 0.36
VPS33A-209ENST00000544349 L1TD1Q5T7N2 865 aaKnown RBP17.27■□□□□ 0.35
VPS33A-209ENST00000544349 VGLL2Q8N8G2 317 aa17.27■□□□□ 0.35
VPS33A-209ENST00000544349 EDC3Q96F86 508 aaKnown RBP17.27■□□□□ 0.35
VPS33A-209ENST00000544349 SETDB2Q96T68 719 aa17.27■□□□□ 0.35
VPS33A-209ENST00000544349 SEC31BQ9NQW1 1179 aa17.27■□□□□ 0.35
VPS33A-209ENST00000544349 COL24A1Q17RW2 1714 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 PHF14O94880 888 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 XRCC6P12956 609 aaKnown RBP eCLIP17.26■□□□□ 0.35
VPS33A-209ENST00000544349 MCCP23508 829 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 RFC4P35249 363 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 XAGE2Q96GT9 111 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 GBP4Q96PP9 640 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 DNAJC2Q99543 621 aaKnown RBP17.26■□□□□ 0.35
VPS33A-209ENST00000544349 GOLGA6L3A6NEY3 463 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 RXRBP28702 533 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 SLC10A5Q5PT55 438 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.26■□□□□ 0.35
VPS33A-209ENST00000544349 PANK2Q9BZ23 570 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 NYXQ9GZU5 481 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 LSG1Q9H089 658 aaKnown RBP17.26■□□□□ 0.35
VPS33A-209ENST00000544349 NDUFB9Q9Y6M9 179 aa17.26■□□□□ 0.35
VPS33A-209ENST00000544349 UBR3Q6ZT12 1888 aa17.25■□□□□ 0.35
VPS33A-209ENST00000544349 PDE8BO95263 885 aa17.25■□□□□ 0.35
VPS33A-209ENST00000544349 ADRA2BP18089 450 aa17.25■□□□□ 0.35
VPS33A-209ENST00000544349 ADORA1P30542 326 aa17.25■□□□□ 0.35
VPS33A-209ENST00000544349 PKP1Q13835 747 aa17.25■□□□□ 0.35
VPS33A-209ENST00000544349 ATP2B3Q16720 1220 aa17.25■□□□□ 0.35
VPS33A-209ENST00000544349 CCDC158Q5M9N0 1113 aa17.25■□□□□ 0.35
VPS33A-209ENST00000544349 MROH5Q6ZUA9 1318 aa17.25■□□□□ 0.35
VPS33A-209ENST00000544349 NMIQ13287 307 aaPredicted RBP17.24■□□□□ 0.35
VPS33A-209ENST00000544349 SF3B3Q15393 1217 aaKnown RBP17.24■□□□□ 0.35
VPS33A-209ENST00000544349 KIAA1211Q6ZU35 1233 aa17.24■□□□□ 0.35
VPS33A-209ENST00000544349 RAD50Q92878 1312 aa17.24■□□□□ 0.35
VPS33A-209ENST00000544349 CASZ1Q86V15 1759 aa17.24■□□□□ 0.35
VPS33A-209ENST00000544349 IFIT1P09914 478 aaKnown RBP17.24■□□□□ 0.35
VPS33A-209ENST00000544349 GTF2E1P29083 439 aaPredicted RBP17.24■□□□□ 0.35
VPS33A-209ENST00000544349 ANAPC15P60006 121 aa17.24■□□□□ 0.35
VPS33A-209ENST00000544349 ZGPATQ8N5A5 531 aaKnown RBP17.24■□□□□ 0.35
VPS33A-209ENST00000544349 FAM227BQ96M60 508 aa17.24■□□□□ 0.35
VPS33A-209ENST00000544349 MPHOSPH8Q99549 860 aa17.24■□□□□ 0.35
VPS33A-209ENST00000544349 PALD1Q9ULE6 856 aa17.24■□□□□ 0.35
VPS33A-209ENST00000544349 RFX7Q2KHR2 1363 aa17.24■□□□□ 0.35
VPS33A-209ENST00000544349 GORABQ5T7V8 394 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 NBPF5PQ86XG9 351 aaPredicted RBP17.23■□□□□ 0.35
VPS33A-209ENST00000544349 SNRKQ9NRH2 765 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.23■□□□□ 0.35
VPS33A-209ENST00000544349 HSPA4P34932 840 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 IGHMBP2P38935 993 aaKnown RBP17.23■□□□□ 0.35
VPS33A-209ENST00000544349 TXNRD1Q16881 649 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 TTC39AQ5SRH9 613 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 C3orf67Q6ZVT6 689 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 PROM2Q8N271 834 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 KBTBD3Q8NAB2 608 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 IL17RAQ96F46 866 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 PAG1Q9NWQ8 432 aa17.23■□□□□ 0.35
VPS33A-209ENST00000544349 A0A0D9SFI3 127 aa17.22■□□□□ 0.35
VPS33A-209ENST00000544349 TPTE2Q6XPS3 522 aa17.22■□□□□ 0.35
VPS33A-209ENST00000544349 DDX46Q7L014 1031 aaKnown RBP17.22■□□□□ 0.35
VPS33A-209ENST00000544349 SPEF2Q9C093 1822 aa17.22■□□□□ 0.35
VPS33A-209ENST00000544349 ABCC12Q96J65 1359 aa17.22■□□□□ 0.35
VPS33A-209ENST00000544349 GOLIM4O00461 696 aa17.21■□□□□ 0.35
VPS33A-209ENST00000544349 ST18O60284 1047 aa17.21■□□□□ 0.35
VPS33A-209ENST00000544349 CYP2E1P05181 493 aaPredicted RBP17.21■□□□□ 0.35
VPS33A-209ENST00000544349 CDC5LQ99459 802 aaKnown RBP17.21■□□□□ 0.35
VPS33A-209ENST00000544349 BAG4O95429 457 aaKnown RBP17.21■□□□□ 0.35
VPS33A-209ENST00000544349 HMGB2P26583 209 aaKnown RBP17.21■□□□□ 0.35
VPS33A-209ENST00000544349 TICAM2Q86XR7 235 aa17.21■□□□□ 0.35
VPS33A-209ENST00000544349 PLSCR1O15162 318 aa17.2■□□□□ 0.34
VPS33A-209ENST00000544349 FGFR2P21802 821 aa17.2■□□□□ 0.34
VPS33A-209ENST00000544349 PTH1RQ03431 593 aa17.2■□□□□ 0.34
VPS33A-209ENST00000544349 PUM3Q15397 648 aaKnown RBP17.2■□□□□ 0.34
VPS33A-209ENST00000544349 CLEC17AQ6ZS10 378 aa17.2■□□□□ 0.34
VPS33A-209ENST00000544349 HELBQ8NG08 1087 aaPredicted RBP17.2■□□□□ 0.34
VPS33A-209ENST00000544349 RGS17Q9UGC6 210 aaPredicted RBP17.2■□□□□ 0.34
VPS33A-209ENST00000544349 LPIN2Q92539 896 aa17.2■□□□□ 0.34
VPS33A-209ENST00000544349 NLRP3Q96P20 1036 aa17.2■□□□□ 0.34
VPS33A-209ENST00000544349 MED23Q9ULK4 1368 aa17.19■□□□□ 0.34
VPS33A-209ENST00000544349 COL4A1P02462 1669 aa17.19■□□□□ 0.34
VPS33A-209ENST00000544349 NFIXQ14938 502 aa17.19■□□□□ 0.34
VPS33A-209ENST00000544349 ZNF512BQ96KM6 892 aaPredicted RBP17.19■□□□□ 0.34
VPS33A-209ENST00000544349 CCDC171Q6TFL3 1326 aa17.19■□□□□ 0.34
VPS33A-209ENST00000544349 ARAP2Q8WZ64 1704 aa17.18■□□□□ 0.34
VPS33A-209ENST00000544349 GAS2L3Q86XJ1 694 aa17.18■□□□□ 0.34
VPS33A-209ENST00000544349 ANKRD18AQ8IVF6 992 aa17.18■□□□□ 0.34
VPS33A-209ENST00000544349 TAF1P21675 1872 aa17.18■□□□□ 0.34
VPS33A-209ENST00000544349 CARMIL3Q8ND23 1372 aa17.18■□□□□ 0.34
VPS33A-209ENST00000544349 TAF5LO75529 589 aa17.18■□□□□ 0.34
VPS33A-209ENST00000544349 APBA3O96018 575 aa17.18■□□□□ 0.34
VPS33A-209ENST00000544349 FKBP4Q02790 459 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS33A-209ENST00000544349 SCARF1Q14162 830 aa17.18■□□□□ 0.34
VPS33A-209ENST00000544349 GYS1P13807 737 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms