RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 CLCN6P51797 869 aa13.19□□□□□ -0.3
CDH4-201ENST00000543233 GORABQ5T7V8 394 aa13.19□□□□□ -0.3
CDH4-201ENST00000543233 FBXO18Q8NFZ0 1043 aa13.19□□□□□ -0.3
CDH4-201ENST00000543233 GOLGA5Q8TBA6 731 aa13.19□□□□□ -0.3
CDH4-201ENST00000543233 TRMT1Q9NXH9 659 aaKnown RBP13.19□□□□□ -0.3
CDH4-201ENST00000543233 FAM53CQ9NYF3 392 aa13.19□□□□□ -0.3
CDH4-201ENST00000543233 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.19□□□□□ -0.3
CDH4-201ENST00000543233 H0YHG0 523 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 AP5Z1O43299 807 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 SLU7O95391 586 aaKnown RBP13.18□□□□□ -0.3
CDH4-201ENST00000543233 SARNPP82979 210 aaKnown RBP13.18□□□□□ -0.3
CDH4-201ENST00000543233 PTPN14Q15678 1187 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 AMOTQ4VCS5 1084 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 CCDC183Q5T5S1 534 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 GIMAP6Q6P9H5 292 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 RIC3Q7Z5B4 369 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 SSH3Q8TE77 659 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 FHOD1Q9Y613 1164 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 SKIDA1Q1XH10 827 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 CEMIPQ8WUJ3 1361 aa13.18□□□□□ -0.3
CDH4-201ENST00000543233 OSBPL3Q9H4L5 887 aa13.17□□□□□ -0.3
CDH4-201ENST00000543233 CPA1P15085 419 aa13.17□□□□□ -0.3
CDH4-201ENST00000543233 C19orf44Q9H6X5 657 aa13.17□□□□□ -0.3
CDH4-201ENST00000543233 SLC24A3Q9HC58 644 aa13.17□□□□□ -0.3
CDH4-201ENST00000543233 PDRG1Q9NUG6 133 aa13.17□□□□□ -0.3
CDH4-201ENST00000543233 ARGLU1Q9NWB6 273 aaPredicted RBP13.17□□□□□ -0.3
CDH4-201ENST00000543233 NRBP1Q9UHY1 535 aa13.17□□□□□ -0.3
CDH4-201ENST00000543233 ARHGAP29Q52LW3 1261 aa13.17□□□□□ -0.3
CDH4-201ENST00000543233 PPM1EQ8WY54 764 aa13.17□□□□□ -0.3
CDH4-201ENST00000543233 CCDC8Q9H0W5 538 aaPredicted RBP13.17□□□□□ -0.3
CDH4-201ENST00000543233 ZNF335Q9H4Z2 1342 aaPredicted RBP13.16□□□□□ -0.3
CDH4-201ENST00000543233 CCDC189A1A4V9 331 aa13.16□□□□□ -0.3
CDH4-201ENST00000543233 EIF3CLB5ME19 914 aaKnown RBP13.16□□□□□ -0.3
CDH4-201ENST00000543233 PRPF38AQ8NAV1 312 aaKnown RBP13.16□□□□□ -0.3
CDH4-201ENST00000543233 TMX3Q96JJ7 454 aa13.16□□□□□ -0.3
CDH4-201ENST00000543233 EIF3CQ99613 913 aaKnown RBP13.16□□□□□ -0.3
CDH4-201ENST00000543233 ADCY9O60503 1353 aa13.16□□□□□ -0.3
CDH4-201ENST00000543233 SCP2P22307 547 aa13.16□□□□□ -0.3
CDH4-201ENST00000543233 ARID4AP29374 1257 aaPredicted RBP13.16□□□□□ -0.3
CDH4-201ENST00000543233 USP48Q86UV5 1035 aa13.16□□□□□ -0.3
CDH4-201ENST00000543233 TRIM5Q9C035 493 aa13.16□□□□□ -0.3
CDH4-201ENST00000543233 ZNF330Q9Y3S2 320 aaPredicted RBP13.16□□□□□ -0.3
CDH4-201ENST00000543233 SALL3Q9BXA9 1300 aa13.16□□□□□ -0.3
CDH4-201ENST00000543233 PLEKHG2Q9H7P9 1386 aa13.15□□□□□ -0.3
CDH4-201ENST00000543233 PPP1R12AO14974 1030 aaPredicted RBP13.15□□□□□ -0.3
CDH4-201ENST00000543233 TTC19Q6DKK2 380 aaPredicted RBP13.15□□□□□ -0.3
CDH4-201ENST00000543233 RBM28Q9NW13 759 aaKnown RBP13.15□□□□□ -0.3
CDH4-201ENST00000543233 ERBB3P21860 1342 aa13.15□□□□□ -0.3
CDH4-201ENST00000543233 ATP5J2-PTCD1G3V325 749 aa13.15□□□□□ -0.3
CDH4-201ENST00000543233 PTCD1O75127 700 aaKnown RBP13.15□□□□□ -0.3
CDH4-201ENST00000543233 SEC31AO94979 1220 aaKnown RBP13.15□□□□□ -0.3
CDH4-201ENST00000543233 CLSTN1O94985 981 aa13.15□□□□□ -0.3
CDH4-201ENST00000543233 AACSQ86V21 672 aa13.15□□□□□ -0.3
CDH4-201ENST00000543233 MICALL1Q8N3F8 863 aa13.15□□□□□ -0.3
CDH4-201ENST00000543233 IFIT2P09913 472 aaKnown RBP13.15□□□□□ -0.31
CDH4-201ENST00000543233 TATP17735 454 aaPredicted RBP13.15□□□□□ -0.31
CDH4-201ENST00000543233 KSR2Q6VAB6 950 aa13.15□□□□□ -0.31
CDH4-201ENST00000543233 CLASRPQ8N2M8 674 aaKnown RBP13.15□□□□□ -0.31
CDH4-201ENST00000543233 XAGE3Q8WTP9 111 aa13.15□□□□□ -0.31
CDH4-201ENST00000543233 ZNF496Q96IT1 587 aaPredicted RBP13.15□□□□□ -0.31
CDH4-201ENST00000543233 BABAM1Q9NWV8 329 aa13.15□□□□□ -0.31
CDH4-201ENST00000543233 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.15□□□□□ -0.31
CDH4-201ENST00000543233 SLFNL1Q499Z3 407 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 RNF20Q5VTR2 975 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 MMS22LQ6ZRQ5 1243 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 COPS6Q7L5N1 327 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 SUCLG2Q96I99 432 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 MYD88Q99836 296 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 BICC1Q9H694 974 aaKnown RBP13.14□□□□□ -0.31
CDH4-201ENST00000543233 USP16Q9Y5T5 823 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 NEBLO76041 1014 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 ZNF790Q6PG37 636 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 GIMAP7Q8NHV1 300 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 LTN1O94822 1766 aa13.14□□□□□ -0.31
CDH4-201ENST00000543233 CHMP3Q9Y3E7 222 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 NDUFB9Q9Y6M9 179 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 RGPD2P0DJD1 1756 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 TTC5Q8N0Z6 440 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 PI4K2BQ8TCG2 481 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 TMEM94Q12767 1356 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 USP27XA6NNY8 438 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 POLA2Q14181 598 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 ZSCAN25Q6NSZ9 544 aa13.13□□□□□ -0.31
CDH4-201ENST00000543233 SYTL4Q96C24 671 aaPredicted RBP13.13□□□□□ -0.31
CDH4-201ENST00000543233 NFAT5O94916 1531 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 RAB11FIP3O75154 756 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 IVLP07476 585 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 CASTP20810 708 aaKnown RBP13.12□□□□□ -0.31
CDH4-201ENST00000543233 IBSPP21815 317 aaPredicted RBP13.12□□□□□ -0.31
CDH4-201ENST00000543233 ACTN2P35609 894 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 GSCP56915 257 aaPredicted RBP13.12□□□□□ -0.31
CDH4-201ENST00000543233 ZRSR1Q15695 479 aaKnown RBP13.12□□□□□ -0.31
CDH4-201ENST00000543233 CNTROBQ8N137 903 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 BOLA2Q9H3K6 86 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 GRM8O00222 908 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 TPM1P09493 284 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 ZNF513Q8N8E2 541 aaPredicted RBP13.12□□□□□ -0.31
CDH4-201ENST00000543233 TLR7Q9NYK1 1049 aaKnown RBP13.12□□□□□ -0.31
CDH4-201ENST00000543233 STAP2Q9UGK3 403 aa13.12□□□□□ -0.31
CDH4-201ENST00000543233 LMTK3Q96Q04 1460 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms