RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 SPRYD7Q5W111 196 aa12.65□□□□□ -0.38
YBX3-211ENST00000541351 ZNF34Q8IZ26 560 aa12.65□□□□□ -0.38
YBX3-211ENST00000541351 R3HDMLQ9H3Y0 253 aa12.65□□□□□ -0.38
YBX3-211ENST00000541351 NSFL1CQ9UNZ2 370 aaKnown RBP12.65□□□□□ -0.38
YBX3-211ENST00000541351 SIPA1L3O60292 1781 aaPredicted RBP12.65□□□□□ -0.38
YBX3-211ENST00000541351 UBN2Q6ZU65 1347 aa12.64□□□□□ -0.39
YBX3-211ENST00000541351 WDHD1O75717 1129 aaPredicted RBP12.64□□□□□ -0.39
YBX3-211ENST00000541351 GIGYF2Q6Y7W6 1299 aaKnown RBP12.64□□□□□ -0.39
YBX3-211ENST00000541351 MOB2Q70IA6 237 aa12.64□□□□□ -0.39
YBX3-211ENST00000541351 NGEFQ8N5V2 710 aa12.64□□□□□ -0.39
YBX3-211ENST00000541351 SLC10A4Q96EP9 437 aa12.64□□□□□ -0.39
YBX3-211ENST00000541351 ZC3H12CQ9C0D7 883 aaKnown RBP12.64□□□□□ -0.39
YBX3-211ENST00000541351 PANK3Q9H999 370 aa12.64□□□□□ -0.39
YBX3-211ENST00000541351 MYOZ2Q9NPC6 264 aa12.64□□□□□ -0.39
YBX3-211ENST00000541351 DDX60Q8IY21 1712 aaKnown RBP12.63□□□□□ -0.39
YBX3-211ENST00000541351 UNCXA6NJT0 531 aa12.63□□□□□ -0.39
YBX3-211ENST00000541351 RIMBP2O15034 1052 aa12.63□□□□□ -0.39
YBX3-211ENST00000541351 USP17L8P0C7I0 530 aa12.63□□□□□ -0.39
YBX3-211ENST00000541351 MMP14P50281 582 aa12.63□□□□□ -0.39
YBX3-211ENST00000541351 PRO3102Q9H379 93 aa12.63□□□□□ -0.39
YBX3-211ENST00000541351 COL6A3P12111 3177 aa12.62□□□□□ -0.39
YBX3-211ENST00000541351 RSBN1LQ6PCB5 846 aaPredicted RBP12.62□□□□□ -0.39
YBX3-211ENST00000541351 C3orf67Q6ZVT6 689 aa12.62□□□□□ -0.39
YBX3-211ENST00000541351 OGFOD1Q8N543 542 aa12.62□□□□□ -0.39
YBX3-211ENST00000541351 DEFB123Q8N688 67 aa12.62□□□□□ -0.39
YBX3-211ENST00000541351 ZBTB3Q9H5J0 574 aa12.62□□□□□ -0.39
YBX3-211ENST00000541351 PRDM6Q9NQX0 595 aa12.62□□□□□ -0.39
YBX3-211ENST00000541351 HTTP42858 3142 aa12.62□□□□□ -0.39
YBX3-211ENST00000541351 RTL9Q8NET4 1388 aa12.61□□□□□ -0.39
YBX3-211ENST00000541351 GNRH1P01148 92 aa12.61□□□□□ -0.39
YBX3-211ENST00000541351 CAPN2P17655 700 aa12.61□□□□□ -0.39
YBX3-211ENST00000541351 PTPN12Q05209 780 aaKnown RBP12.61□□□□□ -0.39
YBX3-211ENST00000541351 KIF22Q14807 665 aa12.61□□□□□ -0.39
YBX3-211ENST00000541351 HSP90AB3PQ58FF7 597 aa12.61□□□□□ -0.39
YBX3-211ENST00000541351 SLC51AQ86UW1 340 aa12.61□□□□□ -0.39
YBX3-211ENST00000541351 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.61□□□□□ -0.39
YBX3-211ENST00000541351 ASTN2O75129 1339 aaPredicted RBP12.61□□□□□ -0.39
YBX3-211ENST00000541351 NUP98P52948 1817 aa12.6□□□□□ -0.39
YBX3-211ENST00000541351 PRMT2P55345 433 aa12.6□□□□□ -0.39
YBX3-211ENST00000541351 CRHR2Q13324 411 aa12.6□□□□□ -0.39
YBX3-211ENST00000541351 DOK7Q18PE1 504 aa12.6□□□□□ -0.39
YBX3-211ENST00000541351 APOBEC3FQ8IUX4 373 aaKnown RBP12.6□□□□□ -0.39
YBX3-211ENST00000541351 RRP7AQ9Y3A4 280 aaKnown RBP12.6□□□□□ -0.39
YBX3-211ENST00000541351 U2SURPO15042 1029 aaKnown RBP12.59□□□□□ -0.39
YBX3-211ENST00000541351 PPP1R12BO60237 982 aaPredicted RBP12.59□□□□□ -0.39
YBX3-211ENST00000541351 LDLRAD1Q5T700 205 aa12.59□□□□□ -0.39
YBX3-211ENST00000541351 ANGEL1Q9UNK9 670 aaKnown RBP12.59□□□□□ -0.39
YBX3-211ENST00000541351 PTCH2Q9Y6C5 1203 aa12.59□□□□□ -0.39
YBX3-211ENST00000541351 CENPFP49454 3210 aa12.59□□□□□ -0.39
YBX3-211ENST00000541351 ERBB4Q15303 1308 aa12.59□□□□□ -0.39
YBX3-211ENST00000541351 ZBTB7BO15156 539 aaPredicted RBP12.58□□□□□ -0.4
YBX3-211ENST00000541351 RANBP2P49792 3224 aaKnown RBP12.58□□□□□ -0.4
YBX3-211ENST00000541351 TTLL7Q6ZT98 887 aa12.58□□□□□ -0.4
YBX3-211ENST00000541351 PNISRQ8TF01 805 aaKnown RBP12.58□□□□□ -0.4
YBX3-211ENST00000541351 LRCH3Q96II8 777 aa12.58□□□□□ -0.4
YBX3-211ENST00000541351 SH3TC1Q8TE82 1336 aa12.58□□□□□ -0.4
YBX3-211ENST00000541351 BRCA2P51587 3418 aa12.58□□□□□ -0.4
YBX3-211ENST00000541351 DUOX1Q9NRD9 1551 aa12.57□□□□□ -0.4
YBX3-211ENST00000541351 IGF2BP3O00425 579 aaKnown RBP eCLIP12.57□□□□□ -0.4
YBX3-211ENST00000541351 EVI5O60447 810 aa12.57□□□□□ -0.4
YBX3-211ENST00000541351 MYL6BP14649 208 aa12.57□□□□□ -0.4
YBX3-211ENST00000541351 TAF7Q15545 349 aaPredicted RBP12.57□□□□□ -0.4
YBX3-211ENST00000541351 WNK4Q96J92 1243 aa12.57□□□□□ -0.4
YBX3-211ENST00000541351 ZFYVE28Q9HCC9 887 aa12.57□□□□□ -0.4
YBX3-211ENST00000541351 POLLQ9UGP5 575 aa12.57□□□□□ -0.4
YBX3-211ENST00000541351 TRMT112Q9UI30 125 aaKnown RBP12.57□□□□□ -0.4
YBX3-211ENST00000541351 MYO3BQ8WXR4 1341 aa12.57□□□□□ -0.4
YBX3-211ENST00000541351 ANKRD36CQ5JPF3 1778 aa12.56□□□□□ -0.4
YBX3-211ENST00000541351 KDM3BQ7LBC6 1761 aa12.56□□□□□ -0.4
YBX3-211ENST00000541351 WTIPA6NIX2 430 aaPredicted RBP12.56□□□□□ -0.4
YBX3-211ENST00000541351 HTATSF1O43719 755 aaKnown RBP12.56□□□□□ -0.4
YBX3-211ENST00000541351 MYCP01106 439 aaPredicted RBP12.56□□□□□ -0.4
YBX3-211ENST00000541351 HCLS1P14317 486 aaPredicted RBP12.56□□□□□ -0.4
YBX3-211ENST00000541351 PRAMEF18Q5VWM3 479 aa12.56□□□□□ -0.4
YBX3-211ENST00000541351 PODNQ7Z5L7 613 aa12.56□□□□□ -0.4
YBX3-211ENST00000541351 KCNQ5Q9NR82 932 aa12.56□□□□□ -0.4
YBX3-211ENST00000541351 COL1A1P02452 1464 aaPredicted RBP12.55□□□□□ -0.4
YBX3-211ENST00000541351 USP17L3A6NCW0 530 aa12.55□□□□□ -0.4
YBX3-211ENST00000541351 USP17L4A6NCW7 530 aa12.55□□□□□ -0.4
YBX3-211ENST00000541351 SOX1O00570 391 aaPredicted RBP12.55□□□□□ -0.4
YBX3-211ENST00000541351 PRKG1Q13976 671 aa12.55□□□□□ -0.4
YBX3-211ENST00000541351 MAP3K11Q16584 847 aa12.55□□□□□ -0.4
YBX3-211ENST00000541351 USP17L1Q7RTZ2 530 aa12.55□□□□□ -0.4
YBX3-211ENST00000541351 TBC1D16Q8TBP0 767 aa12.55□□□□□ -0.4
YBX3-211ENST00000541351 SYMPKQ92797 1274 aaKnown RBP12.55□□□□□ -0.4
YBX3-211ENST00000541351 LAMB4A4D0S4 1761 aa12.55□□□□□ -0.4
YBX3-211ENST00000541351 LRRC37AA6NMS7 1700 aa12.54□□□□□ -0.4
YBX3-211ENST00000541351 HSP90B1P14625 803 aaKnown RBP12.54□□□□□ -0.4
YBX3-211ENST00000541351 IREB2P48200 963 aaKnown RBP12.54□□□□□ -0.4
YBX3-211ENST00000541351 EIF4G2P78344 907 aaKnown RBP eCLIP12.54□□□□□ -0.4
YBX3-211ENST00000541351 GPSM2P81274 684 aa12.54□□□□□ -0.4
YBX3-211ENST00000541351 PODXL2Q9NZ53 605 aa12.54□□□□□ -0.4
YBX3-211ENST00000541351 ANKIB1Q9P2G1 1089 aa12.54□□□□□ -0.4
YBX3-211ENST00000541351 GGA1Q9UJY5 639 aa12.54□□□□□ -0.4
YBX3-211ENST00000541351 PPP2R3BQ9Y5P8 575 aa12.54□□□□□ -0.4
YBX3-211ENST00000541351 WNT10BO00744 389 aa12.53□□□□□ -0.4
YBX3-211ENST00000541351 UFL1O94874 794 aa12.53□□□□□ -0.4
YBX3-211ENST00000541351 GJB1P08034 283 aa12.53□□□□□ -0.4
YBX3-211ENST00000541351 HOXD10P28358 340 aa12.53□□□□□ -0.4
YBX3-211ENST00000541351 BMP8BP34820 402 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms