RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 CALM1P0DP23 149 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 CALM2P0DP24 149 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 CALM3P0DP25 149 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 GSE1Q14687 1217 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 PPFIBP1Q86W92 1011 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 ZNF592Q92610 1267 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 PYM1Q9BRP8 204 aaKnown RBP16.49■□□□□ 0.23
COLCA1-204ENST00000540738 MYO6Q9UM54 1294 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 RNF113AO15541 343 aaKnown RBP16.49■□□□□ 0.23
COLCA1-204ENST00000540738 SAMM50Q9Y512 469 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 ABCC3O15438 1527 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 VTI1AQ96AJ9 217 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 CALML4Q96GE6 196 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 TSPY26PQ9H489 355 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 BICC1Q9H694 974 aaKnown RBP16.49■□□□□ 0.23
COLCA1-204ENST00000540738 ANKARQ7Z5J8 1434 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 LOC102724428A0A0B4J2F2 783 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 CBFA2T2O43439 604 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 SIK1P57059 783 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 BRINP3Q76B58 766 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 TEX11Q8IYF3 940 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 TSPYL6Q8N831 410 aa16.49■□□□□ 0.23
COLCA1-204ENST00000540738 PA2G4Q9UQ80 394 aaKnown RBP16.49■□□□□ 0.23
COLCA1-204ENST00000540738 CCP110O43303 1012 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 CAVIN1Q6NZI2 390 aaKnown RBP16.48■□□□□ 0.23
COLCA1-204ENST00000540738 CERKQ8TCT0 537 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 SCAND2PQ9GZW5 306 aaPredicted RBP16.48■□□□□ 0.23
COLCA1-204ENST00000540738 SEPT12Q8IYM1 358 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 ERMNQ8TAM6 284 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 PPIP5K2O43314 1243 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 TFCP2Q12800 502 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 MAGEB6Q8N7X4 407 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 TMOD4Q9NZQ9 345 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 DEF6Q9H4E7 631 aa16.48■□□□□ 0.23
COLCA1-204ENST00000540738 KRT24Q2M2I5 525 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 PER1O15534 1290 aaPredicted RBP16.47■□□□□ 0.23
COLCA1-204ENST00000540738 C2CD5Q86YS7 1000 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 CCDC150Q8NCX0 1101 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 LRRC27Q9C0I9 530 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 ZBTB43O43298 467 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 FGFR1OPO95684 399 aaKnown RBP16.47■□□□□ 0.23
COLCA1-204ENST00000540738 AMPD3Q01432 767 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 ATP7BP35670 1465 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 PLS1Q14651 629 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 ZNF408Q9H9D4 720 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 KIF24Q5T7B8 1368 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 SPDYE4A6NLX3 237 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 PDE1AP54750 535 aa16.47■□□□□ 0.23
COLCA1-204ENST00000540738 MROH5Q6ZUA9 1318 aa16.46■□□□□ 0.23
COLCA1-204ENST00000540738 TCIRG1Q13488 830 aa16.46■□□□□ 0.23
COLCA1-204ENST00000540738 MSL1Q68DK7 614 aa16.46■□□□□ 0.23
COLCA1-204ENST00000540738 ORC3Q9UBD5 711 aaPredicted RBP16.46■□□□□ 0.23
COLCA1-204ENST00000540738 GCC2Q8IWJ2 1684 aa16.46■□□□□ 0.23
COLCA1-204ENST00000540738 SMARCC2Q8TAQ2 1214 aa16.46■□□□□ 0.23
COLCA1-204ENST00000540738 RTL9Q8NET4 1388 aa16.46■□□□□ 0.23
COLCA1-204ENST00000540738 CCT2P78371 535 aaKnown RBP16.46■□□□□ 0.22
COLCA1-204ENST00000540738 BIN2Q9UBW5 565 aaPredicted RBP16.46■□□□□ 0.22
COLCA1-204ENST00000540738 EIF4A1P60842 406 aaKnown RBP16.45■□□□□ 0.22
COLCA1-204ENST00000540738 RPS8P62241 208 aaKnown RBP16.45■□□□□ 0.22
COLCA1-204ENST00000540738 TNFAIP1Q13829 316 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 MAP3K4Q9Y6R4 1608 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 SLC26A6Q9BXS9 759 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 NUP62CLQ9H1M0 184 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 SHROOM2Q13796 1616 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 SMTNL1A8MU46 457 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 BMP15O95972 392 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 CDR1P51861 262 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 NUCB1Q02818 461 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 RTN1Q16799 776 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 ARHGAP27Q6ZUM4 889 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 LPIN2Q92539 896 aa16.45■□□□□ 0.22
COLCA1-204ENST00000540738 AATKQ6ZMQ8 1374 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 ARHGEF10LQ9HCE6 1279 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 DLGAP5Q15398 846 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 UBA5Q9GZZ9 404 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 USP6P35125 1406 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 KLF18A0A0U1RQI7 1052 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 TRAK2O60296 914 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 RBM6P78332 1123 aaKnown RBP16.44■□□□□ 0.22
COLCA1-204ENST00000540738 MIGA1Q8NAN2 632 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 CAGE1Q8TC20 777 aa16.44■□□□□ 0.22
COLCA1-204ENST00000540738 SPATA31A3Q5VYP0 1347 aa16.43■□□□□ 0.22
COLCA1-204ENST00000540738 NOM1Q5C9Z4 860 aaKnown RBP16.43■□□□□ 0.22
COLCA1-204ENST00000540738 FERMT3Q86UX7 667 aa16.43■□□□□ 0.22
COLCA1-204ENST00000540738 CKAP2LQ8IYA6 745 aa16.43■□□□□ 0.22
COLCA1-204ENST00000540738 AFF2P51816 1311 aa16.43■□□□□ 0.22
COLCA1-204ENST00000540738 CEP85Q6P2H3 762 aa16.43■□□□□ 0.22
COLCA1-204ENST00000540738 UBA7P41226 1012 aa16.43■□□□□ 0.22
COLCA1-204ENST00000540738 CCDC144CPQ8IYA2 1237 aa16.43■□□□□ 0.22
COLCA1-204ENST00000540738 A0A1B0GUL7 405 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 TMC4Q7Z404 712 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 ATP2B4P23634 1241 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 CETN1Q12798 172 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 GCKRQ14397 625 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 TSHZ3Q63HK5 1081 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 RNF214Q8ND24 703 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 MNS1Q8NEH6 495 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 RRP36Q96EU6 259 aaKnown RBP16.42■□□□□ 0.22
COLCA1-204ENST00000540738 C6orf50Q9HD87 102 aa16.42■□□□□ 0.22
COLCA1-204ENST00000540738 RAD50Q92878 1312 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms