RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 PTH1RQ03431 593 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 EDC3Q96F86 508 aaKnown RBP11.6□□□□□ -0.55
CLIP1-212ENST00000540304 CCDC85AQ96PX6 553 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-212ENST00000540304 DNAJC2Q99543 621 aaKnown RBP11.6□□□□□ -0.55
CLIP1-212ENST00000540304 CWC22Q9HCG8 908 aaKnown RBP11.6□□□□□ -0.55
CLIP1-212ENST00000540304 AKAP2Q9Y2D5 859 aa11.6□□□□□ -0.55
CLIP1-212ENST00000540304 PDE8AO60658 829 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 UPF3BQ9BZI7 483 aaKnown RBP11.59□□□□□ -0.55
CLIP1-212ENST00000540304 NDUFB9Q9Y6M9 179 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 NHSQ6T4R5 1651 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 ANKRD18BA2A2Z9 1011 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 CAMTA2O94983 1202 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 ITGA6P23229 1130 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 KCNB2Q92953 911 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 TMX3Q96JJ7 454 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 AK7Q96M32 723 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 GREM2Q9H772 168 aa11.59□□□□□ -0.55
CLIP1-212ENST00000540304 LAMB2P55268 1798 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 BTAF1O14981 1849 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 TICAM2Q86XR7 235 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 RASEFQ8IZ41 740 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 CERKQ8TCT0 537 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 MAP4K1Q92918 833 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 TNPO1Q92973 898 aaKnown RBP11.58□□□□□ -0.56
CLIP1-212ENST00000540304 RIC1Q4ADV7 1423 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 LRP5O75197 1615 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 NECTIN1Q15223 517 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 KBTBD3Q8NAB2 608 aa11.58□□□□□ -0.56
CLIP1-212ENST00000540304 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLIP1-212ENST00000540304 RBM8AQ9Y5S9 174 aaKnown RBP11.58□□□□□ -0.56
CLIP1-212ENST00000540304 SH3TC1Q8TE82 1336 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 DDX60Q8IY21 1712 aaKnown RBP11.57□□□□□ -0.56
CLIP1-212ENST00000540304 PARP10Q53GL7 1025 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 PRPF40BQ6NWY9 871 aaKnown RBP11.57□□□□□ -0.56
CLIP1-212ENST00000540304 DDX46Q7L014 1031 aaKnown RBP11.57□□□□□ -0.56
CLIP1-212ENST00000540304 GBP4Q96PP9 640 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 PAG1Q9NWQ8 432 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 DDX11L8A8MPP1 907 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 IFIT1P09914 478 aaKnown RBP11.57□□□□□ -0.56
CLIP1-212ENST00000540304 KCNJ4P48050 445 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 NUCB2P80303 420 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 CUL4AQ13619 759 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 SUSD4Q5VX71 490 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 LDHAL6AQ6ZMR3 332 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 UTP14AQ9BVJ6 771 aaKnown RBP11.57□□□□□ -0.56
CLIP1-212ENST00000540304 RIPOR2Q9Y4F9 1068 aa11.57□□□□□ -0.56
CLIP1-212ENST00000540304 ZKSCAN1P17029 563 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-212ENST00000540304 NCLP19338 710 aaKnown RBP11.56□□□□□ -0.56
CLIP1-212ENST00000540304 MEX3CQ5U5Q3 659 aaKnown RBP11.56□□□□□ -0.56
CLIP1-212ENST00000540304 ZGPATQ8N5A5 531 aaKnown RBP11.56□□□□□ -0.56
CLIP1-212ENST00000540304 LINC00116Q8NCU8 138 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 TM6SF1Q9BZW5 370 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 ZNF652Q9Y2D9 606 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 GOLIM4O00461 696 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 CHGBP05060 677 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 METTL24Q5JXM2 366 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 CCDC158Q5M9N0 1113 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 CREB3L3Q68CJ9 461 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 ZNF589Q86UQ0 364 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-212ENST00000540304 XAGE2Q96GT9 111 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 TTC14Q96N46 770 aa11.56□□□□□ -0.56
CLIP1-212ENST00000540304 CNTNAP4Q9C0A0 1308 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 SCN7AQ01118 1682 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 ABCC12Q96J65 1359 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 GORABQ5T7V8 394 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 RNF20Q5VTR2 975 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 RGS22Q8NE09 1264 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 INTS4Q96HW7 963 aaKnown RBP11.55□□□□□ -0.56
CLIP1-212ENST00000540304 CNNM1Q9NRU3 951 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 TAF5LO75529 589 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 CASTP20810 708 aaKnown RBP11.55□□□□□ -0.56
CLIP1-212ENST00000540304 SSFA2P28290 1259 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 MAPK8IP2Q13387 824 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-212ENST00000540304 ATP2B3Q16720 1220 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 MCMDC2Q4G0Z9 681 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 TTC39AQ5SRH9 613 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 JAKMIP1Q96N16 626 aaKnown RBP11.55□□□□□ -0.56
CLIP1-212ENST00000540304 NIP7Q9Y221 180 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLIP1-212ENST00000540304 EP400Q96L91 3159 aa11.55□□□□□ -0.56
CLIP1-212ENST00000540304 SLC27A2O14975 620 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 DTNBO60941 627 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 CYP2E1P05181 493 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-212ENST00000540304 ADORA1P30542 326 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 PKP1Q13835 747 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 TMED8Q6PL24 325 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-212ENST00000540304 CLEC17AQ6ZS10 378 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 GJD4Q96KN9 370 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-212ENST00000540304 ZSWIM6Q9HCJ5 1215 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 HMG20BQ9P0W2 317 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 ARAP2Q8WZ64 1704 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 RPAP1Q9BWH6 1393 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-212ENST00000540304 NTSR2O95665 410 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 CLEC4GQ6UXB4 293 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 VGLL2Q8N8G2 317 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 LARP6Q9BRS8 491 aaKnown RBP11.54□□□□□ -0.56
CLIP1-212ENST00000540304 HELLSQ9NRZ9 838 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 CYP46A1Q9Y6A2 500 aa11.54□□□□□ -0.56
CLIP1-212ENST00000540304 SBF2Q86WG5 1849 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 FAM177BA6PVY3 158 aa11.53□□□□□ -0.56
CLIP1-212ENST00000540304 RGL2O15211 777 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms