RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 ME1P48163 572 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 MTX1Q13505 466 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 HOMER1Q86YM7 354 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 NDUFB9Q9Y6M9 179 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 TAF5LO75529 589 aa17.44■□□□□ 0.38
SYNE1-236ENST00000537750 NEK1Q96PY6 1258 aa17.44■□□□□ 0.38
SYNE1-236ENST00000537750 EPC1Q9H2F5 836 aa17.44■□□□□ 0.38
SYNE1-236ENST00000537750 CHD2O14647 1828 aaKnown RBP17.44■□□□□ 0.38
SYNE1-236ENST00000537750 EIF4A1P60842 406 aaKnown RBP17.44■□□□□ 0.38
SYNE1-236ENST00000537750 SEC62Q99442 399 aaKnown RBP17.44■□□□□ 0.38
SYNE1-236ENST00000537750 DNAJC2Q99543 621 aaKnown RBP17.44■□□□□ 0.38
SYNE1-236ENST00000537750 LGR6Q9HBX8 967 aa17.44■□□□□ 0.38
SYNE1-236ENST00000537750 ZCCHC17Q9NP64 241 aaKnown RBP17.44■□□□□ 0.38
SYNE1-236ENST00000537750 DNAI1Q9UI46 699 aa17.44■□□□□ 0.38
SYNE1-236ENST00000537750 NRXN3Q9Y4C0 1643 aa17.44■□□□□ 0.38
SYNE1-236ENST00000537750 FAM160A1Q05DH4 1040 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 DPCR1Q3MIW9 517 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 CCDC129Q6ZRS4 1044 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 ERC1Q8IUD2 1116 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 KLHDC4Q8TBB5 520 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 SDF4Q9BRK5 362 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 TRIM34Q9BYJ4 488 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 SNRKQ9NRH2 765 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 MAP3K2Q9Y2U5 619 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 MED23Q9ULK4 1368 aa17.43■□□□□ 0.38
SYNE1-236ENST00000537750 N4BP2Q86UW6 1770 aaPredicted RBP17.42■□□□□ 0.38
SYNE1-236ENST00000537750 A0A1B0GVL5 298 aa17.42■□□□□ 0.38
SYNE1-236ENST00000537750 BIN1O00499 593 aa17.42■□□□□ 0.38
SYNE1-236ENST00000537750 ZRANB2O95218 330 aaKnown RBP eCLIP17.42■□□□□ 0.38
SYNE1-236ENST00000537750 SFPQP23246 707 aaKnown RBP eCLIP17.42■□□□□ 0.38
SYNE1-236ENST00000537750 ST5P78524 1137 aa17.42■□□□□ 0.38
SYNE1-236ENST00000537750 G3BP1Q13283 466 aaKnown RBP eCLIP17.42■□□□□ 0.38
SYNE1-236ENST00000537750 TMCO3Q6UWJ1 677 aa17.42■□□□□ 0.38
SYNE1-236ENST00000537750 IPO4Q8TEX9 1081 aaKnown RBP17.42■□□□□ 0.38
SYNE1-236ENST00000537750 UBXN4Q92575 508 aa17.42■□□□□ 0.38
SYNE1-236ENST00000537750 COL15A1P39059 1388 aa17.42■□□□□ 0.38
SYNE1-236ENST00000537750 FAM193AP78312 1265 aa17.42■□□□□ 0.38
SYNE1-236ENST00000537750 HMG20BQ9P0W2 317 aa17.42■□□□□ 0.38
SYNE1-236ENST00000537750 ORC3Q9UBD5 711 aaPredicted RBP17.42■□□□□ 0.38
SYNE1-236ENST00000537750 TECPR2O15040 1411 aa17.41■□□□□ 0.38
SYNE1-236ENST00000537750 FANCGO15287 622 aa17.41■□□□□ 0.38
SYNE1-236ENST00000537750 CCT2P78371 535 aaKnown RBP17.41■□□□□ 0.38
SYNE1-236ENST00000537750 RAD51AP2Q09MP3 1159 aa17.41■□□□□ 0.38
SYNE1-236ENST00000537750 TSGA10IPQ3SY00 556 aa17.41■□□□□ 0.38
SYNE1-236ENST00000537750 LRRC37A3O60309 1634 aa17.41■□□□□ 0.38
SYNE1-236ENST00000537750 CTDNEP1O95476 244 aa17.41■□□□□ 0.38
SYNE1-236ENST00000537750 CREBRFQ8IUR6 639 aa17.41■□□□□ 0.38
SYNE1-236ENST00000537750 NAT10Q9H0A0 1025 aaKnown RBP17.41■□□□□ 0.38
SYNE1-236ENST00000537750 IMPACTQ9P2X3 320 aa17.41■□□□□ 0.38
SYNE1-236ENST00000537750 PSDA5PKW4 1024 aaPredicted RBP17.4■□□□□ 0.38
SYNE1-236ENST00000537750 PROSER3Q2NL68 480 aa17.4■□□□□ 0.38
SYNE1-236ENST00000537750 NSUN7Q8NE18 718 aaKnown RBP17.4■□□□□ 0.38
SYNE1-236ENST00000537750 SUCLG2Q96I99 432 aa17.4■□□□□ 0.38
SYNE1-236ENST00000537750 NCOA5Q9HCD5 579 aaKnown RBP17.4■□□□□ 0.38
SYNE1-236ENST00000537750 FEZ2Q9UHY8 353 aaPredicted RBP17.4■□□□□ 0.38
SYNE1-236ENST00000537750 CYP21A2P08686 494 aa17.4■□□□□ 0.38
SYNE1-236ENST00000537750 ETF1P62495 437 aaKnown RBP17.4■□□□□ 0.38
SYNE1-236ENST00000537750 ISM2Q6H9L7 571 aa17.4■□□□□ 0.38
SYNE1-236ENST00000537750 SMARCC2Q8TAQ2 1214 aa17.4■□□□□ 0.38
SYNE1-236ENST00000537750 KAZALD1Q96I82 304 aa17.4■□□□□ 0.38
SYNE1-236ENST00000537750 BICC1Q9H694 974 aaKnown RBP17.4■□□□□ 0.38
SYNE1-236ENST00000537750 PTPDC1A2A3K4 754 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 URI1O94763 535 aaPredicted RBP17.39■□□□□ 0.37
SYNE1-236ENST00000537750 PTPN21Q16825 1174 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 FMR1NBQ8N0W7 255 aaPredicted RBP17.39■□□□□ 0.37
SYNE1-236ENST00000537750 CCDC150Q8NCX0 1101 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 SMARCE1Q969G3 411 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 CARD6Q9BX69 1037 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 BABAM1Q9NWV8 329 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 PCDHA7Q9UN72 937 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 NALCNQ8IZF0 1738 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 NDUFA8P51970 172 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 NLRP6P59044 892 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 SLC20A2Q08357 652 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 APOBRQ0VD83 1088 aa17.39■□□□□ 0.37
SYNE1-236ENST00000537750 ILDR1Q86SU0 546 aaPredicted RBP17.39■□□□□ 0.37
SYNE1-236ENST00000537750 HOXC9P31274 260 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 GOLGA8FQ08AF8 430 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 GOLGA8DPQ0D2H9 430 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 USPL1Q5W0Q7 1092 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 FAM177A1Q8N128 213 aaPredicted RBP17.38■□□□□ 0.37
SYNE1-236ENST00000537750 MNS1Q8NEH6 495 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 NGDNQ8NEJ9 315 aaKnown RBP17.38■□□□□ 0.37
SYNE1-236ENST00000537750 SASH3O75995 380 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 LMOD1P29536 600 aaPredicted RBP17.38■□□□□ 0.37
SYNE1-236ENST00000537750 KRT32Q14532 448 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 ARGLU1Q9NWB6 273 aaPredicted RBP17.38■□□□□ 0.37
SYNE1-236ENST00000537750 FMN2Q9NZ56 1722 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 STOX1Q6ZVD7 989 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 NFATC2IPQ8NCF5 419 aa17.38■□□□□ 0.37
SYNE1-236ENST00000537750 ALDH1L1O75891 902 aa17.37■□□□□ 0.37
SYNE1-236ENST00000537750 GYS2P54840 703 aa17.37■□□□□ 0.37
SYNE1-236ENST00000537750 ZRSR1Q15695 479 aaKnown RBP17.37■□□□□ 0.37
SYNE1-236ENST00000537750 TEX35Q5T0J7 233 aa17.37■□□□□ 0.37
SYNE1-236ENST00000537750 NAA16Q6N069 864 aaPredicted RBP17.37■□□□□ 0.37
SYNE1-236ENST00000537750 TRIM65Q6PJ69 517 aa17.37■□□□□ 0.37
SYNE1-236ENST00000537750 MRPS27Q92552 414 aaKnown RBP17.37■□□□□ 0.37
SYNE1-236ENST00000537750 KIAA1468Q9P260 1216 aa17.37■□□□□ 0.37
SYNE1-236ENST00000537750 ATP1A3P13637 1013 aa17.37■□□□□ 0.37
SYNE1-236ENST00000537750 KRBA2Q6ZNG9 492 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms