RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 A0A087WZG4 1122 aa13.64□□□□□ -0.23
SYNE1-234ENST00000536990 RIOK3O14730 519 aaKnown RBP13.64□□□□□ -0.23
SYNE1-234ENST00000536990 JAK2O60674 1132 aa13.64□□□□□ -0.23
SYNE1-234ENST00000536990 TDRD7Q8NHU6 1098 aaKnown RBP13.64□□□□□ -0.23
SYNE1-234ENST00000536990 GOLGA6L4A6NEF3 574 aa13.64□□□□□ -0.23
SYNE1-234ENST00000536990 RESTQ13127 1097 aa13.64□□□□□ -0.23
SYNE1-234ENST00000536990 RABL6Q3YEC7 729 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-234ENST00000536990 PLA2G4DQ86XP0 818 aa13.64□□□□□ -0.23
SYNE1-234ENST00000536990 TMEM94Q12767 1356 aa13.64□□□□□ -0.23
SYNE1-234ENST00000536990 NR1I2O75469 434 aa13.64□□□□□ -0.23
SYNE1-234ENST00000536990 ABCC6O95255 1503 aa13.63□□□□□ -0.23
SYNE1-234ENST00000536990 ZNF75DP51815 510 aa13.63□□□□□ -0.23
SYNE1-234ENST00000536990 KRT32Q14532 448 aa13.63□□□□□ -0.23
SYNE1-234ENST00000536990 CCDC186Q7Z3E2 898 aa13.63□□□□□ -0.23
SYNE1-234ENST00000536990 PLEKHG2Q9H7P9 1386 aa13.63□□□□□ -0.23
SYNE1-234ENST00000536990 PLBD2Q8NHP8 589 aa13.63□□□□□ -0.23
SYNE1-234ENST00000536990 CTIFO43310 598 aaKnown RBP13.62□□□□□ -0.23
SYNE1-234ENST00000536990 BRF1Q92994 677 aa13.62□□□□□ -0.23
SYNE1-234ENST00000536990 NRBP1Q9UHY1 535 aa13.62□□□□□ -0.23
SYNE1-234ENST00000536990 LRMPQ12912 555 aa13.62□□□□□ -0.23
SYNE1-234ENST00000536990 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-234ENST00000536990 NEK1Q96PY6 1258 aa13.62□□□□□ -0.23
SYNE1-234ENST00000536990 ZNF609O15014 1411 aa13.62□□□□□ -0.23
SYNE1-234ENST00000536990 RFX7Q2KHR2 1363 aa13.62□□□□□ -0.23
SYNE1-234ENST00000536990 CHAF1AQ13111 956 aaPredicted RBP13.61□□□□□ -0.23
SYNE1-234ENST00000536990 DNAJC2Q99543 621 aaKnown RBP13.61□□□□□ -0.23
SYNE1-234ENST00000536990 ARFGEF2Q9Y6D5 1785 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 TNS3Q68CZ2 1445 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 LMBR1LQ6UX01 489 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 Q6ZUG5 572 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 ANKRD7Q92527 254 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 DBNDD2Q9BQY9 259 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 CHGBP05060 677 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 ZNF165P49910 485 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 CASP7P55210 303 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 CADPS2Q86UW7 1296 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 BICD2Q8TD16 824 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 TRIM5Q9C035 493 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 DNAJC25Q9H1X3 360 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 NDUFB9Q9Y6M9 179 aa13.61□□□□□ -0.23
SYNE1-234ENST00000536990 DCCP43146 1447 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 PKD1L3Q7Z443 1732 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 ZSCAN25Q6NSZ9 544 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 DDX11Q96FC9 970 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 U3KPZ7 1027 aaPredicted RBP13.6□□□□□ -0.23
SYNE1-234ENST00000536990 MYH15Q9Y2K3 1946 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 CYP21A2P08686 494 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 CCDC129Q6ZRS4 1044 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 SMARCC2Q8TAQ2 1214 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 HAUS7Q99871 368 aa13.6□□□□□ -0.23
SYNE1-234ENST00000536990 ADD1P35611 737 aaKnown RBP13.59□□□□□ -0.23
SYNE1-234ENST00000536990 PPP4R3BQ5MIZ7 849 aa13.59□□□□□ -0.23
SYNE1-234ENST00000536990 SEC62Q99442 399 aaKnown RBP13.59□□□□□ -0.23
SYNE1-234ENST00000536990 ZSCAN16Q9H4T2 348 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-234ENST00000536990 SPATA31A3Q5VYP0 1347 aa13.59□□□□□ -0.23
SYNE1-234ENST00000536990 LAMA4Q16363 1823 aa13.59□□□□□ -0.23
SYNE1-234ENST00000536990 ATP2B3Q16720 1220 aa13.59□□□□□ -0.23
SYNE1-234ENST00000536990 DRC7Q8IY82 874 aa13.59□□□□□ -0.23
SYNE1-234ENST00000536990 CAVIN2O95810 425 aa13.58□□□□□ -0.23
SYNE1-234ENST00000536990 SCRN1Q12765 414 aa13.58□□□□□ -0.23
SYNE1-234ENST00000536990 MCMDC2Q4G0Z9 681 aa13.58□□□□□ -0.23
SYNE1-234ENST00000536990 PRDM10Q9NQV6 1147 aa13.58□□□□□ -0.23
SYNE1-234ENST00000536990 NBPF26B4DH59 902 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 H7C1W4 665 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 CDC25BP30305 580 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 IQCB1Q15051 598 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 NBPF14Q5TI25 921 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 NBPF10Q6P3W6 841 aaKnown RBP13.58□□□□□ -0.24
SYNE1-234ENST00000536990 STOX1Q6ZVD7 989 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 DDX46Q7L014 1031 aaKnown RBP13.58□□□□□ -0.24
SYNE1-234ENST00000536990 NBPF15Q8N660 670 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 CFAP45Q9UL16 551 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 CPDO75976 1380 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 H3BQV1 296 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 PFKFB2O60825 505 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 ZSCAN20P17040 1043 aaPredicted RBP13.58□□□□□ -0.24
SYNE1-234ENST00000536990 FOXO4P98177 505 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 CCDC144BQ3MJ40 725 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 IFFO2Q5TF58 517 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 CCDC144CPQ8IYA2 1237 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 PDCL2Q8N4E4 241 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 CACTINQ8WUQ7 758 aaKnown RBP13.58□□□□□ -0.24
SYNE1-234ENST00000536990 NEUROD6Q96NK8 337 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 LLPHQ9BRT6 129 aaKnown RBP13.58□□□□□ -0.24
SYNE1-234ENST00000536990 CCDC9Q9Y3X0 531 aaKnown RBP13.58□□□□□ -0.24
SYNE1-234ENST00000536990 LAMB4A4D0S4 1761 aa13.58□□□□□ -0.24
SYNE1-234ENST00000536990 HSP90B1P14625 803 aaKnown RBP13.57□□□□□ -0.24
SYNE1-234ENST00000536990 KBTBD3Q8NAB2 608 aa13.57□□□□□ -0.24
SYNE1-234ENST00000536990 CWC25Q9NXE8 425 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-234ENST00000536990 NAA16Q6N069 864 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-234ENST00000536990 SARM1Q6SZW1 724 aa13.57□□□□□ -0.24
SYNE1-234ENST00000536990 TTLL7Q6ZT98 887 aa13.57□□□□□ -0.24
SYNE1-234ENST00000536990 LRRC2Q9BYS8 371 aa13.57□□□□□ -0.24
SYNE1-234ENST00000536990 CLIP2Q9UDT6 1046 aa13.57□□□□□ -0.24
SYNE1-234ENST00000536990 RCOR1Q9UKL0 485 aa13.57□□□□□ -0.24
SYNE1-234ENST00000536990 CTDNEP1O95476 244 aa13.56□□□□□ -0.24
SYNE1-234ENST00000536990 NSUN7Q8NE18 718 aaKnown RBP13.56□□□□□ -0.24
SYNE1-234ENST00000536990 ZCRB1Q8TBF4 217 aaKnown RBP13.56□□□□□ -0.24
SYNE1-234ENST00000536990 CBX1P83916 185 aa13.56□□□□□ -0.24
SYNE1-234ENST00000536990 C11orf57Q6ZUT1 292 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms