RNA–Protein interactions for RNA: ENST00000526829.1

VPS11-202, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 1,952 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-202ENST00000526829 TMEM88BA6NKF7 163 aa13.7□□□□□ -0.22
VPS11-202ENST00000526829 PPP4R3BQ5MIZ7 849 aa13.7□□□□□ -0.22
VPS11-202ENST00000526829 SLC51AQ86UW1 340 aa13.7□□□□□ -0.22
VPS11-202ENST00000526829 UTP14AQ9BVJ6 771 aaKnown RBP13.7□□□□□ -0.22
VPS11-202ENST00000526829 ANXA1P04083 346 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 TPM2P07951 284 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 EIF6P56537 245 aaKnown RBP13.69□□□□□ -0.22
VPS11-202ENST00000526829 TAF3Q5VWG9 929 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 NLRP3Q96P20 1036 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 CLEC11AQ9Y240 323 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 PLIN1O60240 522 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 NEUROD2Q15784 382 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 NBPF20Q3BBV1 942 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 HSP90AB3PQ58FF7 597 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 LARGE2Q8N3Y3 721 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 CDCA7LQ96GN5 454 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 MAP7D2Q96T17 732 aa13.69□□□□□ -0.22
VPS11-202ENST00000526829 SKAP1Q86WV1 359 aa13.68□□□□□ -0.22
VPS11-202ENST00000526829 CNTROBQ8N137 903 aa13.68□□□□□ -0.22
VPS11-202ENST00000526829 VPS33BQ9H267 617 aa13.68□□□□□ -0.22
VPS11-202ENST00000526829 RRAGDQ9NQL2 400 aaPredicted RBP13.68□□□□□ -0.22
VPS11-202ENST00000526829 ATP6V0A2Q9Y487 856 aa13.68□□□□□ -0.22
VPS11-202ENST00000526829 CHL1O00533 1208 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 SCNN1DP51172 638 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 MAP1SQ66K74 1059 aaPredicted RBP13.67□□□□□ -0.22
VPS11-202ENST00000526829 COPS6Q7L5N1 327 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 GJA3Q9Y6H8 435 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 ABCC4O15439 1325 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 VEGFBP49765 207 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 NLRP10Q86W26 655 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 XAGE3Q8WTP9 111 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 RUNDC1Q96C34 613 aa13.67□□□□□ -0.22
VPS11-202ENST00000526829 DDX21Q9NR30 783 aaKnown RBP eCLIP13.67□□□□□ -0.22
VPS11-202ENST00000526829 RASSF10A6NK89 507 aa13.66□□□□□ -0.22
VPS11-202ENST00000526829 LMOD1P29536 600 aaPredicted RBP13.66□□□□□ -0.22
VPS11-202ENST00000526829 AIMP1Q12904 312 aaKnown RBP13.66□□□□□ -0.22
VPS11-202ENST00000526829 TCIRG1Q13488 830 aa13.66□□□□□ -0.22
VPS11-202ENST00000526829 CCDC146Q8IYE0 955 aa13.66□□□□□ -0.22
VPS11-202ENST00000526829 RTFDC1Q9BY42 306 aaPredicted RBP13.66□□□□□ -0.22
VPS11-202ENST00000526829 TRIM35Q9UPQ4 493 aa13.66□□□□□ -0.22
VPS11-202ENST00000526829 NIM1KQ8IY84 436 aa13.65□□□□□ -0.22
VPS11-202ENST00000526829 NECTIN2Q92692 538 aa13.65□□□□□ -0.22
VPS11-202ENST00000526829 FOXN1O15353 648 aa13.65□□□□□ -0.22
VPS11-202ENST00000526829 PPIP5K2O43314 1243 aa13.65□□□□□ -0.22
VPS11-202ENST00000526829 BBOX1O75936 387 aa13.65□□□□□ -0.22
VPS11-202ENST00000526829 EPS15P42566 896 aa13.65□□□□□ -0.22
VPS11-202ENST00000526829 KRT24Q2M2I5 525 aa13.65□□□□□ -0.22
VPS11-202ENST00000526829 SP8Q8IXZ3 490 aa13.65□□□□□ -0.22
VPS11-202ENST00000526829 LRRC37AA6NMS7 1700 aa13.64□□□□□ -0.23
VPS11-202ENST00000526829 DDX60Q8IY21 1712 aaKnown RBP13.64□□□□□ -0.23
VPS11-202ENST00000526829 SH3TC1Q8TE82 1336 aa13.64□□□□□ -0.23
VPS11-202ENST00000526829 SLC20A2Q08357 652 aa13.64□□□□□ -0.23
VPS11-202ENST00000526829 USP50Q70EL3 339 aaPredicted RBP13.64□□□□□ -0.23
VPS11-202ENST00000526829 SUPT20HQ8NEM7 779 aa13.64□□□□□ -0.23
VPS11-202ENST00000526829 TRPM7Q96QT4 1865 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 HOXB7P09629 217 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 HCLS1P14317 486 aaPredicted RBP13.63□□□□□ -0.23
VPS11-202ENST00000526829 DMTNQ08495 405 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 AOC3Q16853 763 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 THSD7BQ9C0I4 1608 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 CAPN15O75808 1086 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 KIF20AO95235 890 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 CLCN1P35523 988 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 DEFB115Q30KQ5 88 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 WBP1LQ9NX94 342 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 CHPF2Q9P2E5 772 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 TRMT112Q9UI30 125 aaKnown RBP13.63□□□□□ -0.23
VPS11-202ENST00000526829 ZNRF3Q9ULT6 936 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 TAF1P21675 1872 aa13.63□□□□□ -0.23
VPS11-202ENST00000526829 DUOX1Q9NRD9 1551 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 CXCL9Q07325 125 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 KIAA2012Q0VF49 1180 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 GRAPQ13588 217 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 BECN1Q14457 450 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 DDX46Q7L014 1031 aaKnown RBP13.62□□□□□ -0.23
VPS11-202ENST00000526829 EGFL6Q8IUX8 553 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.62□□□□□ -0.23
VPS11-202ENST00000526829 GRAPLQ8TC17 118 aaPredicted RBP13.62□□□□□ -0.23
VPS11-202ENST00000526829 GPRC5DQ9NZD1 345 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 C20orf194Q5TEA3 1177 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 DPP8Q6V1X1 898 aaPredicted RBP13.62□□□□□ -0.23
VPS11-202ENST00000526829 TMC4Q7Z404 712 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 MPNDQ8N594 471 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 PLBD2Q8NHP8 589 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 ISCA1Q9BUE6 129 aa13.62□□□□□ -0.23
VPS11-202ENST00000526829 CTCFP49711 727 aaPredicted RBP13.61□□□□□ -0.23
VPS11-202ENST00000526829 HDGFL1Q5TGJ6 251 aa13.61□□□□□ -0.23
VPS11-202ENST00000526829 NBPF11Q86T75 865 aa13.61□□□□□ -0.23
VPS11-202ENST00000526829 AIDAQ96BJ3 306 aa13.61□□□□□ -0.23
VPS11-202ENST00000526829 ADARB2Q9NS39 739 aaKnown RBP13.61□□□□□ -0.23
VPS11-202ENST00000526829 ADAMTS8Q9UP79 889 aa13.61□□□□□ -0.23
VPS11-202ENST00000526829 CDHR2Q9BYE9 1310 aa13.6□□□□□ -0.23
VPS11-202ENST00000526829 WDR33Q9C0J8 1336 aaKnown RBP13.6□□□□□ -0.23
VPS11-202ENST00000526829 CCDC27Q2M243 656 aa13.6□□□□□ -0.23
VPS11-202ENST00000526829 YY1AP1Q9H869 796 aa13.6□□□□□ -0.23
VPS11-202ENST00000526829 DBF4Q9UBU7 674 aaPredicted RBP13.6□□□□□ -0.23
VPS11-202ENST00000526829 ZHX1Q9UKY1 873 aaPredicted RBP13.6□□□□□ -0.23
VPS11-202ENST00000526829 FMR1Q06787 632 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS11-202ENST00000526829 MAPK8IP2Q13387 824 aaPredicted RBP13.6□□□□□ -0.23
VPS11-202ENST00000526829 ANKRD13DQ6ZTN6 518 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms